DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LRCH3 and Sclp

DIOPT Version :10

Sequence 1:NP_001350816.1 Gene:LRCH3 / 84859 HGNCID:28637 Length:803 Species:Homo sapiens
Sequence 2:NP_001259475.1 Gene:Sclp / 32156 FlyBaseID:FBgn0030357 Length:339 Species:Drosophila melanogaster


Alignment Length:351 Identity:77/351 - (21%)
Similarity:133/351 - (37%) Gaps:122/351 - (34%)


- Green bases have known domain annotations that are detailed below.


Human    19 VASGGNLPGVHCGPSSGAGPGFGPGSWSRSLDRALEE-----------------AAVTGVLS--- 63
            :.:|||..|.:.|.:....|  ..|:.:|:.:.:.|:                 |.:.|:::   
  Fly    11 IPNGGNNGGNNGGNNGNNDP--NDGNDNRNTNISSEDPSEESGLSDDPSIPPHIARIGGIVTCPP 73

Human    64 LSG----RKLREFPRGAANHDLTDTTRADLSRNRLSEIPIEACHFV---SLENLNLYQNCIRYI- 120
            ::|    |.::.......||.|      |||...|.:||....|.:   .|...||..|.::.: 
  Fly    74 IAGQGVIRVVQRCEDAKENHKL------DLSSCELMQIPDAVYHLMRNTELITCNLSGNVLKSVS 132

Human   121 PEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLMELDVSCNEI 185
            |:.......:|.||:|.|:||                      .||||...|..|.:|::|.|..
  Fly   133 PKFSQKFSTITDLNLSHNKLS----------------------RLPEEFASLSALTKLNISNNSF 175

Human   186 QTIPSQIGNLEALRDLNVRRNHLVHLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQTITLDN 250
            ..:|..:..|::|..|:.:.|.::.:..:.|             ||:        .:|..:.|.|
  Fly   176 IVLPQVVFKLQSLASLDAQNNAILEIDTDEA-------------ITS--------DNLALVDLRN 219

Human   251 NPLQSPPAQICIKGKVHIFK---YLNIQACKIAPDLPD------------YDRRPLGFGSCHEEL 300
            |||    ::.| :.|:..||   :|     :|:.|:.|            :|.. ||||:     
  Fly   220 NPL----SRNC-RRKLQSFKTPFHL-----EISKDVEDDWFLTKSREITRWDSH-LGFGN----- 268

Human   301 YSSRPYGALDSGFNSVDSGDKRWSGN 326
                        |::.||..||.:.|
  Fly   269 ------------FSNYDSTRKRGTAN 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LRCH3NP_001350816.1 leucine-rich repeat 61..83 CDD:275380 5/28 (18%)
LRR <80..>286 CDD:443914 51/224 (23%)
leucine-rich repeat 84..106 CDD:275380 7/24 (29%)
leucine-rich repeat 107..129 CDD:275380 5/22 (23%)
leucine-rich repeat 130..145 CDD:275380 7/14 (50%)
leucine-rich repeat 152..174 CDD:275380 5/21 (24%)
leucine-rich repeat 175..197 CDD:275380 6/21 (29%)
leucine-rich repeat 198..218 CDD:275380 4/19 (21%)
leucine-rich repeat 220..242 CDD:275380 2/21 (10%)
leucine-rich repeat 243..261 CDD:275380 6/17 (35%)
CH_SF 654..763 CDD:469584
SclpNP_001259475.1 LRR <93..>223 CDD:443914 44/182 (24%)
leucine-rich repeat 93..115 CDD:275380 9/27 (33%)
leucine-rich repeat 116..141 CDD:275380 5/24 (21%)
leucine-rich repeat 142..164 CDD:275380 12/43 (28%)
leucine-rich repeat 165..187 CDD:275380 6/21 (29%)
leucine-rich repeat 188..211 CDD:275380 6/43 (14%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.