Sequence 1: | NP_001119800.1 | Gene: | LNX1 / 84708 | HGNCID: | 6657 | Length: | 728 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_511080.2 | Gene: | Traf6 / 31746 | FlyBaseID: | FBgn0265464 | Length: | 475 | Species: | Drosophila melanogaster |
Alignment Length: | 420 | Identity: | 89/420 - (21%) |
---|---|---|---|
Similarity: | 146/420 - (34%) | Gaps: | 135/420 - (32%) |
- Green bases have known domain annotations that are detailed below.
Human 22 SLEENHFYS----YPEEVDDDLI-----CHICLQALLDPLDTPCGHTYCTLCLTNFLVEKD-FCP 76
Human 77 MDRKPLVLQH------------------CKKSSILVNKL-----LNKLLVTCPFR-------EHC 111
Human 112 TQVLQRCD---------LEHHFQTSCKGASHYGLTKDRKRRSQDGCPDGCASLTATAPSPEVSAA 167
Human 168 ATISLMTDEPGLDNPAYVSSAEDG------QPAISPVDSGRSNRTRARPFERSTIRSRSFKKINR 226
Human 227 ALS----VLRRTKSGSAVANHADQGRENSENT-------TAP---------EVFPRLYHLIP--- 268
Human 269 ---------------DGEITSIKINRVD--------------------PSESLSIRLVGGSETPL 298
Human 299 VHIIIQHIYRDGVIARDGRLLPGDIILKVN 328 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LNX1 | NP_001119800.1 | mRING-HC-C3HC3D_LNX1 | 38..79 | CDD:319693 | 17/46 (37%) |
modified RING-HC finger (C3HC3D-type) | 41..78 | CDD:319693 | 15/37 (41%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 178..214 | 6/41 (15%) | |||
NPXY motif | 181..184 | 1/2 (50%) | |||
Interaction with MAGEB18. /evidence=ECO:0000269|PubMed:20864041 | 186..244 | 11/67 (16%) | |||
PDZ_signaling | 272..355 | CDD:238492 | 18/77 (23%) | ||
PDZ_signaling | 380..460 | CDD:238492 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 475..494 | ||||
PDZ_signaling | 505..588 | CDD:238492 | |||
PDZ_signaling | 637..721 | CDD:238492 | |||
Traf6 | NP_511080.2 | RING | 103..141 | CDD:238093 | 14/37 (38%) |
Sina | 163..>230 | CDD:302762 | 15/66 (23%) | ||
MATH_TRAF6 | 330..473 | CDD:239745 | 31/154 (20%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG0297 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |