DRSC/TRiP Functional Genomics Resources

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Protein Alignment LNX1 and dbl5

DIOPT Version :10

Sequence 1:NP_001119800.1 Gene:LNX1 / 84708 HGNCID:6657 Length:728 Species:Homo sapiens
Sequence 2:NP_587745.1 Gene:dbl5 / 2539314 PomBaseID:SPCC548.05C Length:468 Species:Schizosaccharomyces pombe


Alignment Length:496 Identity:99/496 - (19%)
Similarity:151/496 - (30%) Gaps:178/496 - (35%)


- Green bases have known domain annotations that are detailed below.


Human    33 EEVDDDLICHICLQALLDPLDTPCGHTYCTLCLTNFLVEKDFCPMDRKPLVLQHCKKSSILVNKL 97
            :::...|.|.||.:||..|..|.||||||..||.|:|.|...||..|:.|..|  ...:.||.::
pombe    77 QKIKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQ--PSPAYLVYEI 139

Human    98 LNKLLVTCPFREHCTQVLQRCDLEHHFQTSCKGASHYGLTKDRKRRSQDGCPDGCASLTATAPSP 162
            :|.:                       ..|..|....|:.::..::.::...||..       ..
pombe   140 MNVV-----------------------AASNSGFPLVGINENPAKKQKEVLFDGMF-------KQ 174

Human   163 EVSAAATISLMTDEPG----------LDNPAYVS----SAEDGQPAISPVDSGR------SNRTR 207
            |.|......|:..|.|          |:||.:..    ...|.|      ||||      .|   
pombe   175 EDSHYPRSILVDSEDGVLRCARCQWELENPYHCDHCGFQISDDQ------DSGREWFWDGEN--- 230

Human   208 ARPFERSTIRSRSFKKINRALSVLRRTKSGSAVANHADQGRENSENTTAPEVFPRL--------- 263
                      :.|...:|.     ..|:.|:...|.|.....::..|..|:.:.|.         
pombe   231 ----------AESDSSLNG-----DNTRGGNISTNRAFNNMGHAPITAVPQDWLRFDEGEEFVGS 280

Human   264 ----------YHLIPDGEITSIKINRVDPSESLS--IRLVGGSETPLVHIIIQHIYRDGVIARDG 316
                      .:.:.||.|.:...:::.|.||..  :..|.||.            .:|:.|.|.
pombe   281 DLESDFSGPGEYDVDDGFIDNRATSQLSPVESDDDFVAPVNGSN------------GNGITALDS 333

Human   317 RLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLWLTVMREQKFRSRNNGQAPDAYR------- 374
              ...:.|..:||.|.......               |.|..:.....|:||..|..|       
pombe   334 --TDSEEIDIMNGFDEERDSGG---------------TNMVSRSETCYNDGQRYDELRRELADIQ 381

Human   375 --------------PRDDSFHVILNKSSPEEQLGIKLVRKVDEPGVFIFNVLDGGVAYRHGQLEE 425
                          |..::.|...:..|.:|..|               |::..|...|..|...
pombe   382 NESLDSLNSSSNNSPSHNNIHSRQHPFSSDEDEG---------------NIVTNGTGLRSSQSSS 431

Human   426 NDRVLAINGHDLRYGSPESAAHLIQASERRVHLVVSRQVRQ 466
            .:|     |.||     |..:.:..||..|      ||.|:
pombe   432 QNR-----GFDL-----EPYSEVFTASYPR------RQARR 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LNX1NP_001119800.1 mRING-HC-C3HC3D_LNX1 38..79 CDD:438435 21/40 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..214 11/55 (20%)
NPXY motif 181..184 2/2 (100%)
Interaction with MAGEB18. /evidence=ECO:0000269|PubMed:20864041 186..244 12/67 (18%)
PDZ1_LNX1_2-like 270..358 CDD:467165 17/89 (19%)
PDZ2_LNX1_2-like 380..462 CDD:467166 16/81 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 475..494
PDZ3_LNX1_2-like 506..591 CDD:467167
PDZ4_LNX1_2-like 637..725 CDD:467168
dbl5NP_587745.1 PHA02929 <16..125 CDD:222944 22/47 (47%)
RING-HC_ScPSH1-like 79..130 CDD:438230 24/52 (46%)
Blue background indicates that the domain is not in the aligned region.

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