DRSC/TRiP Functional Genomics Resources

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Protein Alignment VPS25 and vps-25

DIOPT Version :9

Sequence 1:NP_115729.1 Gene:VPS25 / 84313 HGNCID:28122 Length:176 Species:Homo sapiens
Sequence 2:NP_001379220.1 Gene:vps-25 / 173143 WormBaseID:WBGene00012193 Length:183 Species:Caenorhabditis elegans


Alignment Length:175 Identity:75/175 - (42%)
Similarity:116/175 - (66%) Gaps:1/175 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     2 AMSFEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQ 66
            |.:|:|||||.||||||:|.:::|:.|||.||..||:.:.:.:|..|:.:.||..|.||||.||.
 Worm     8 ASAFKWPWQYDFPPFFTIQKSLNTKDKQLEAWARLVIDYAQHNKIYSLDIAEATTSELFNNQKLN 72

Human    67 RKLPVESIQIVLEELRKKGNLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELT 131
            |:|..:.:..||:.|.:|..:|:.|..::.|.|.||||:.|..:||||...:...|:..||||:|
 Worm    73 RRLSTDGVNTVLQYLEQKKLIEFTDNGRTRFHIFWRRPDVWANMIYQWAVENAFINTPLTLYEIT 137

Human   132 NGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITV-SDGRGVKF 175
            :|:||.:|.||.|:...|::||..|:::.:|:::.: .|..||||
 Worm   138 HGDDTTNESFHNLEREILMKALTCLEEQRRAQLMNIGGDNEGVKF 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VPS25NP_115729.1 ESCRT-II 10..139 CDD:399106 56/128 (44%)
vps-25NP_001379220.1 ESCRT-II 16..145 CDD:399106 56/128 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C161455356
Domainoid 1 1.000 134 1.000 Domainoid score I3459
eggNOG 1 0.900 - - E1_KOG4068
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6303
Inparanoid 1 1.050 170 1.000 Inparanoid score I3165
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54593
OrthoDB 1 1.010 - - D1094121at2759
OrthoFinder 1 1.000 - - FOG0004660
OrthoInspector 1 1.000 - - oto23222
orthoMCL 1 0.900 - - OOG6_103180
Panther 1 1.100 - - LDO PTHR13149
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1645
SonicParanoid 1 1.000 - - X3846
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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