DRSC/TRiP Functional Genomics Resources

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Protein Alignment TRAF7 and swd3

DIOPT Version :10

Sequence 1:NP_115647.2 Gene:TRAF7 / 84231 HGNCID:20456 Length:670 Species:Homo sapiens
Sequence 2:NP_595227.1 Gene:swd3 / 2540929 PomBaseID:SPBC354.03 Length:380 Species:Schizosaccharomyces pombe


Alignment Length:413 Identity:84/413 - (20%)
Similarity:143/413 - (34%) Gaps:143/413 - (34%)


- Green bases have known domain annotations that are detailed below.


Human   344 QSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMG 408
            |..|:.||...:....::.::...|:.|:.     :|:....|....|..||:..|.|:.|....
pombe     7 QFPLNHDLQVQKDQKGVVEEDEEQIHKRIR-----NYESHSGFSEYCTLFGHEKSVTCVSVSPNK 66

Human   409 DLLFSGSSDKTIKVWDTCTTYKCQKTLEGH-DGIVLALCIQGCK-LYSGSADCTIIVWDIQNLQK 471
            ..:.:.|||.|||:| :..|::.:.||.|| .||.......|.| |.|.|.|.||.:||.:....
pombe    67 RWIATSSSDGTIKIW-SALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCS 130

Human   472 VNTIRAHD--------NPVCTLVSSHNVLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVA 528
            |..::.|.        ||:.||      |.|||      ||                        
pombe   131 VRCLKGHTNYVSSIDFNPLGTL------LVSGS------WD------------------------ 159

Human   529 AQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGT--YENLIHVWDIESKEQ 591
                      :|::||:::...|:.:|......:.|::::....:|.|  |:.:..:||:.|.:.
pombe   160 ----------ETVRIWNLQDGTCLRMLPAHSEPIISVSISADGTLCATASYDGMARIWDVLSGQC 214

Human   592 VRTLT-------------------------------------------GHVGTVYALA------- 606
            ::||.                                           .||.|.|:::       
pombe   215 LKTLVEPINVPLSNLQFTENRKYLLVSNLNSQIRLWDYRRNRVVRIFDSHVNTRYSMSWDCYSSK 279

Human   607 ------------VISTPDQTKVFS-------ASYDRSLRVWSMDNMICTQTLLRHQG-------S 645
                        ..|.||..:.|.       .|.|.::::......|.....:||..       :
pombe   280 NIPKNTEALPNNDSSYPDDAESFMHDAYLLIPSEDGTIQITDPSTKIIIDDSIRHSDDPETSLLN 344

Human   646 VTALAVSRGRLFSGAVDSTVKVW 668
            ||:|...   :.:...|..|:||
pombe   345 VTSLGPF---IITSGTDPYVRVW 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TRAF7NP_115647.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..97
mRING-HC-C3HC3D_TRAF7 124..168 CDD:438306
Sina 208..>269 CDD:460824
DD_cGKI 282..322 CDD:473057
PRK03918 283..>373 CDD:235175 6/28 (21%)
WD40 <387..668 CDD:441893 74/368 (20%)
WD 1. /evidence=ECO:0000255 394..433 13/38 (34%)
WD 2. /evidence=ECO:0000255 437..474 15/38 (39%)
WD40 repeat 443..477 CDD:293791 11/34 (32%)
WD 3. /evidence=ECO:0000255 477..513 11/43 (26%)
WD40 repeat 482..517 CDD:293791 8/34 (24%)
WD 4. /evidence=ECO:0000255 515..554 4/38 (11%)
WD40 repeat 527..556 CDD:293791 4/28 (14%)
WD 5. /evidence=ECO:0000255 557..594 7/38 (18%)
WD40 repeat 562..596 CDD:293791 8/35 (23%)
WD 6. /evidence=ECO:0000255 597..638 11/66 (17%)
WD40 repeat 604..639 CDD:293791 7/60 (12%)
WD 7. /evidence=ECO:0000255 641..669 9/35 (26%)
WD40 repeat 646..668 CDD:293791 5/21 (24%)
swd3NP_595227.1 WD40 <49..364 CDD:441893 74/364 (20%)
WD40 repeat 57..94 CDD:293791 13/37 (35%)
WD40 repeat 100..136 CDD:293791 11/35 (31%)
WD40 repeat 141..177 CDD:293791 14/81 (17%)
WD40 repeat 184..219 CDD:293791 8/34 (24%)
WD40 repeat 226..262 CDD:293791 0/35 (0%)
WD40 repeat 269..333 CDD:293791 8/63 (13%)
WD40 repeat 339..364 CDD:293791 5/27 (19%)
Blue background indicates that the domain is not in the aligned region.

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