DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT1G35630 and rnf13

DIOPT Version :9

Sequence 1:NP_174800.2 Gene:AT1G35630 / 840463 AraportID:AT1G35630 Length:318 Species:Arabidopsis thaliana
Sequence 2:NP_957338.1 Gene:rnf13 / 793981 ZFINID:ZDB-GENE-040426-772 Length:377 Species:Danio rerio


Alignment Length:317 Identity:99/317 - (31%)
Similarity:145/317 - (45%) Gaps:66/317 - (20%)


- Green bases have known domain annotations that are detailed below.


plant    28 NTILSFDDVEATFTPIVRNSGECGILYVAEPLEACSDITNMAEKRSKYRSSYVLIVLGGCSFEEK 92
            |...:|||:.|.|...:.:.|..|.|..|.|..||..|....::.:...:..|||....|:|:.|
Zfish    43 NKTENFDDLPARFGYRLPSEGLKGFLIGARPENACVPIEPPPQRENLSSAFIVLIRRFDCNFDIK 107

plant    93 VRKAQKAGYKAAIVYNDGYDELLVPMAGNSSG---------VDIHGLLVTRASGEVLK-GYADQD 147
            |..|||||||||||:|...|:|:      |.|         :||..:.:...:...|| .|..:.
Zfish   108 VLHAQKAGYKAAIVHNVDSDDLI------SMGSEDLDILKQIDIPSVFIGEEAANSLKEDYIYEK 166

plant   148 EMKLWLIPGFG-------ISSWSIMGITFISLLAMSAILATCFVVRRHQIRQSVRDLPHGGQGLS 205
            ...:.|:|.|.       |....|:||..|.::   ..:.|.||..||:.|:            |
Zfish   167 GGHVILMPDFSLPLEYYLIPFLIIVGICLILIV---VFMITKFVQDRHRARR------------S 216

plant   206 CMPRDLLQSMPTEVYSGVLEESSTSVTCAICIDDYCVGEKLRILPCKHKYHAVCIDSWLGRCRSF 270
            .:.:|.|:.:|...:    ::..:...||||:|:|..||:||:|||.|.||..|:|.||.:.:..
Zfish   217 RLRKDQLKKLPIHKF----KKGDSYDVCAICLDEYEEGERLRVLPCSHAYHCKCVDPWLTKTKKT 277

plant   271 CPVCKQN--PRTG---------------NDVPPASETTPLI----SPSPNSITSLQS 306
            ||||||.  |..|               |:|   ||.|||:    |.|.:|..|:.:
Zfish   278 CPVCKQKVVPSDGDSESDSDSVDSGGEDNEV---SENTPLLRSLASTSAHSFGSMSA 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT1G35630NP_174800.2 PA_C_RZF_like 11..155 CDD:239038 43/136 (32%)
zf-RING_2 232..275 CDD:290367 23/42 (55%)
rnf13NP_957338.1 PA_C_RZF_like 23..180 CDD:239038 45/142 (32%)
zf-RING_2 238..282 CDD:290367 23/43 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 44 1.000 Domainoid score I5607
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I2192
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 1 1.000 - - FOG0001489
OrthoInspector 1 1.000 - - mtm515
orthoMCL 1 0.900 - - OOG6_103040
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X670
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.870

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