Protein Alignment RMR1 and rnf13

DIOPT Version :9

• Sequence 1: NP_201417.1
• Gene: RMR1 / 836748
• AraportID: AT5G66160
• Length: 310
• Species: Arabidopsis thaliana
• Sequence 2: NP_001008015.1
• Gene: rnf13 / 493377
• XenbaseID: XB-GENE-954771
• Length: 383
• Species: Xenopus tropicalis
• Alignment Length: 344
• Identity: 105/344 - (30%)
• Similarity: 158/344 - (45%)
• Gaps: 58/344 - (16%)

plant     8 CLLVAAPFLSSL-------------LRVSLATVVLNSISASFADLPAKFDGSVTKNGICGALYVA 59
            |:.:..||.:.|             ::..:|....:::|.:|.||||:|...:..:|:.|.:..|
 Frog     7 CVALMKPFCNLLAFCSCLAVIHLVPVQADVAAYTADNVSRTFDDLPARFGYRLPSDGLKGYIVTA 71

plant    60 DPLDGCS-----PLLHAAASNWTQHRTTKFALIIRGECSFEDKLLNAQNSGFQAVIVYDNIDNED 119
            .|.:.|.     |||....|      :....||.|.||:|:.|:||||.:||:|.:|| |:|::|
 Frog    72 KPENACQPISPPPLLRDNTS------SVFIVLIKRLECNFDLKVLNAQKAGFKAAVVY-NVDSDD 129

plant   120 LIVMKVNPQD----ITVDAVFVSNVAGEILRKYARGRDGECCLNPPDRGSAWTVLAISF-----F 175
            ||.|..|..|    |.:.:||:...:...|::......|...:..||.........|.|     .
 Frog   130 LISMGSNDVDILKQIDIPSVFIGESSARFLKEEFSWEKGGYIVLVPDLTLPLEYYLIPFLIIVGI 194

plant   176 SLLLIVTFLLIAFFAPRHWTQWRGRHTRTIRLDAKLVHTLPCFTFTDSAHHKAGETCAICLEDYR 240
            .|:|||.|::..|...||    |.|..| :|.|.  :..||...|.....:   :.||:||::|.
 Frog   195 CLVLIVIFMITKFVQDRH----RARRNR-LRKDQ--LKKLPIHKFKKGDEY---DVCAVCLDEYE 249

plant   241 FGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVCKH-------DIRTETMSSEVHKRES------- 291
            .|:.||:|||.||:|..|:|.||||...:|||||.       |..:::.||:.....|
 Frog   250 EGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSESDSDSSQEDNEVSENTPLLR 314

plant   292 PRTDTSTSRFAFAQSSQSR 310
            |....||..|.....|.|:
 Frog   315 PMASASTQSFGAISESHSQ 333

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RMR1	NP_201417.1	PA_C_RZF_like	28..166	CDD:239038	47/146 (32%)
		RING	231..277	CDD:238093	25/52 (48%)
rnf13	NP_001008015.1	PA_C_RZF_like	24..181	CDD:239038	48/163 (29%)
		RING_Ubox	239..284	CDD:388418	24/44 (55%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	49	1.000	Domainoid score	I5240
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	1	1.000	-	-		H13493
Inparanoid	1	1.050	146	1.000	Inparanoid score	I2056
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1487241at2759
OrthoFinder	1	1.000	-	-		FOG0001489
OrthoInspector	1	1.000	-	-		mtm3637
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X670
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	8	8.060