Protein Alignment RMR1 and C18B12.4

DIOPT Version :9

• Sequence 1: NP_201417.1
• Gene: RMR1 / 836748
• AraportID: AT5G66160
• Length: 310
• Species: Arabidopsis thaliana
• Sequence 2: NP_510498.1
• Gene: C18B12.4 / 181600
• WormBaseID: WBGene00007666
• Length: 456
• Species: Caenorhabditis elegans
• Alignment Length: 283
• Identity: 76/283 - (26%)
• Similarity: 120/283 - (42%)
• Gaps: 68/283 - (24%)

plant    53 CGALYVADPLDGCSPLLHAAASNWTQHRTTK----FALIIRGE----CSFEDKLLNAQNS--GFQ 107
            ||.  ..:|:|.|.|:..|      |:.||:    ||.:.|..    |.|..:....|||  .|:
 Worm    69 CGV--GVEPVDACGPVRIA------QNHTTRCHNLFAFVSRSNISHPCKFSHQAFMVQNSTYPFR 125

plant   108 AVIVYDNIDNEDLIVMKVNPQD-ITVDAVFVSNVA-GEILRKYA--RGRDGECCLNPPDRGSAWT 168
            .||.|:....|.:.:.....:| :.:..:.:|:.. .||.:|::  .|......::|
 Worm   126 LVIFYNYPGQEPISMEGTELRDKVNIPVLMISHACKEEIAKKFSDTAGYRLRVRIDP-------- 182

plant   169 VLAISFFSLL-LIVTFLLIAFF---------APRHWTQWRGRHTRTIRLDAKLVHTLPCFTFTDS 223
                .::.|. .::.||::..|         ..|...:.|..:.|  ||..:.:..:|.
 Worm   183 ----GYYELFRYLIPFLVVIVFCFALFLITLCVRGCVERRKLNKR--RLSKRNLKKIPV------ 235

plant   224 AHHKAG---ETCAICLEDYRFGESLRLLPCQHAFHLNCIDSWLTKWGTSCPVCKHDIRTETMSSE 285
            ..::.|   :|||||||.:..||.||.|||:|.||.||||.|||:....||:||..|.|:
 Worm   236 KKYRLGDDPDTCAICLESFASGEKLRHLPCRHVFHCNCIDVWLTQTRKICPLCKRKIGTD----- 295

plant   286 VHKRESPRTDTSTSRFAFAQSSQ 308
                    :|:..|....|.:||
 Worm   296 --------SDSECSTNDLASTSQ 310

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RMR1	NP_201417.1	PA_C_RZF_like	28..166	CDD:239038	30/126 (24%)
		RING	231..277	CDD:238093	28/45 (62%)
C18B12.4	NP_510498.1	PA	<74..176	CDD:333703	27/107 (25%)
		HRD1	<223..>335	CDD:227568	40/109 (37%)
		RING-H2_RNF103	246..291	CDD:319387	28/44 (64%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	69	1.000	Domainoid score	I2961
eggNOG	1	0.900	-	-		E1_KOG4628
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	81	1.000	Inparanoid score	I2122
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0001489
OrthoInspector	1	1.000	-	-		otm278
orthoMCL	1	0.900	-	-		OOG6_103040
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X670
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	10	9.720