Protein Alignment RIN3 and hrdl-1

DIOPT Version :9

• Sequence 1: NP_001190515.1
• Gene: RIN3 / 835219
• AraportID: AT5G51450
• Length: 595
• Species: Arabidopsis thaliana
• Sequence 2: NP_492602.2
• Gene: hrdl-1 / 172833
• WormBaseID: WBGene00009164
• Length: 579
• Species: Caenorhabditis elegans
• Alignment Length: 645
• Identity: 131/645 - (20%)
• Similarity: 226/645 - (35%)
• Gaps: 201/645 - (31%)

plant     8 ISVATTALSFVGLQVWTELSLDRLRADGIITKNISLGNSENTLELLLSSHTTIALLASFVLNIYI 72
            ::|.||..|...||   :|..:.||      .|..|.::.......||.||... :|.::|:...
 Worm    46 VTVFTTFRSQPELQ---KLIEEELR------NNTRLSSAYGLNIEALSGHTFFQ-IAHYILSDTT 100

plant    73 LLVLSLKTLFFGDLYAIETRKLV-----------ERLAN-----YIIYKGTFLPFVV-PRTVFQG 120
            |:.:::.:.|  .:.|:.||.::           |.:|.     |::....:|..|: |:...:.
 Worm   101 LIWVAINSYF--AILAVCTRLIIKLTFKELARQEENVARQAFFCYVLLTIVYLSVVIGPQKGHRV 163

plant   121 VLWTIWLTVLCTLKMFQALARDRLDRLNASPSS----------TPWTYFRVYSALFMV--LSTDL 173
            :.|.||..:...|...|.:...||..:  |||.          :.:.:|...:..|::  ....|
 Worm   164 MPWMIWGGICAFLSHLQFITCQRLKHI--SPSCDRGSQKISFLSLFLFFVSIAMTFLISRFQHHL 226

plant   174 CWIKLSLMIYNTVGSSVYLLLLFEPCGIAFETLQALLIHGF-----QLLDMWINHLAVKNSDCQR 233
            .|....|:.::.      ||.:|....|.|..:.:..:..|     :..:.|:.  .:.|..|:
 Worm   227 TWQPAVLLYFDC------LLAVFRSTYILFRCISSSRVFSFNPDSVRHFNYWLE--LITNFVCE- 282

plant   234 SKFYDSMTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWW---LHGMAFHLVDAVLFLNIR 295
              ....::...||.:...||....|||          :::.:.:   ...::.|.....:|.:|.
 Worm   283 --LIQMLSFAQLLAFSPGLNLTSIFFL----------YHMKLTYNCMTEQLSRHRNHKKIFEHIE 335

plant   296 ALLSSILKRIKGYIKLRVALGALHAALLDATSEELRDYDDECAICREPMAKAKRLHCNHLFHLGC 360
                      :.|..::.|.|                 ||.|.:|.|.:..::||.|:|.||..|
 Worm   336 ----------RSYPSVKCANG-----------------DDRCVVCWELLGTSRRLPCSHQFHDWC 373

plant   361 LRSWLDQGLNEVYSCPTCRKPLFVGRTESEANPSRGEVSSDEHLARQFERQNNSVHALTTGMFPT 425
            |..||.|.    .|||||                |..:.|.:...||                |.
 Worm   374 LMWWLAQD----SSCPTC----------------RCTIPSPQDQIRQ----------------PP 402

plant   426 ETPNFTESDPWRLAFLNGISSSHLFLMPY-------------RNSEVDPSWLQTWSDQGVDVVGS 477
            |..|.|     ||.| ||.|...:....:             |.:|.....|||..:|..::...
 Worm   403 EVGNST-----RLRF-NGGSFGFVHFPAFTLEVAANFGPFFGRAAEPTEEQLQTMLEQVREMFPQ 461

plant   478 SAGSRSVGLGQVQLMMRHLASVGEGSAQTTLDDASWGLWPMNPSQASTSSTYVPPGAGGRTGGLH 542
            .:         |.::|..|..  .||||:|:::...|...||.|       ::|       ||:.
 Worm   462 MS---------VDIIMTDLRQ--SGSAQSTIENILEGRIGMNAS-------FMP-------GGVL 501

plant   543 LRTVSRAANNMASILAMAETVREVLPHVPD-----------------EIIFQDLQRTNSV 585
            ...:|..:.|.......||.|:|     ||                 ::.:.::||...:
 Worm   502 DDELSDESENEIEYEEPAEIVQE-----PDNGRQRTWTKLSSSSGDEDLSYYEIQRAKMI 556

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RIN3	NP_001190515.1	HRD1	57..>382	CDD:227568	73/361 (20%)
		RING	336..382	CDD:238093	19/45 (42%)
		CUE_RIN3_plant	556..593	CDD:270605	8/47 (17%)
hrdl-1	NP_492602.2	HRD1	<200..>407	CDD:227568	54/290 (19%)
		zf-RING_2	348..388	CDD:290367	20/59 (34%)
		CUE_AMFR	449..489	CDD:270604	12/50 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5243
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	84	1.000	Inparanoid score	I2092
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D897451at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_105132
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X3836
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.770