DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SCRT1 and Scrt1

DIOPT Version :10

Sequence 1:NP_112599.2 Gene:SCRT1 / 83482 HGNCID:15950 Length:348 Species:Homo sapiens
Sequence 2:NP_001124042.1 Gene:Scrt1 / 366951 RGDID:1306236 Length:348 Species:Rattus norvegicus


Alignment Length:348 Identity:324/348 - (93%)
Similarity:330/348 - (94%) Gaps:0/348 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALLKGPSP 65
            |||||||||||||.||||||:|:|||||||||..|.|||||||||||:|||||||||||||||||
  Rat     1 MPRSFLVKKVKLDTFSSADLDSSYGRARSDLGVRLQDKGYLSDYVGPASVYDGDAEAALLKGPSP 65

Human    66 EPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFITDGRSRRKASN 130
            ||||||||||||||||:||||||||||||||||||||||||||||||||||||||||||||||:|
  Rat    66 EPMYAAAVRGELGPAASGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFITDGRSRRKAAN 130

Human   131 AGAAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGE 195
            |.||:||||||.||||.|||||||.|.|..|||...|||||.||||||||||||.||||||||||
  Rat   131 ANAASAPSTASVAAPDSDAGGGGGPGTRGSGSGSASRGGTRVGAGTEARAGPGATGAGGRHACGE 195

Human   196 CGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRP 260
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   196 CGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMHLLTHDLRHKCGVCGKAFSRP 260

Human   261 WLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYES 325
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   261 WLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHFQCKRCKKSFALKSYLNKHYES 325

Human   326 ACFKGGAGGPAAPAPPQLSPVQA 348
            |||||||.|||.|||||||||||
  Rat   326 ACFKGGASGPATPAPPQLSPVQA 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCRT1NP_112599.2 SNAG domain. /evidence=ECO:0000250 1..20 17/18 (94%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 130..189 45/58 (78%)
C2H2 Zn finger 224..244 CDD:275368 19/19 (100%)
COG5048 <245..>313 CDD:227381 67/67 (100%)
C2H2 Zn finger 250..270 CDD:275368 19/19 (100%)
C2H2 Zn finger 278..298 CDD:275368 19/19 (100%)
C2H2 Zn finger 306..322 CDD:275368 15/15 (100%)
Scrt1NP_001124042.1 C2H2 Zn finger 193..213 CDD:275368 19/19 (100%)
C2H2 Zn finger 224..241 CDD:275371 16/16 (100%)
COG5048 <245..>313 CDD:227381 67/67 (100%)
C2H2 Zn finger 250..270 CDD:275368 19/19 (100%)
C2H2 Zn finger 278..298 CDD:275368 19/19 (100%)
C2H2 Zn finger 306..322 CDD:275368 15/15 (100%)

Return to query results.
Submit another query.