DRSC/TRiP Functional Genomics Resources

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Protein Alignment SYN4 and vtd

DIOPT Version :9

Sequence 1:NP_197131.2 Gene:SYN4 / 831487 AraportID:AT5G16270 Length:1031 Species:Arabidopsis thaliana
Sequence 2:NP_001015132.1 Gene:vtd / 3354896 FlyBaseID:FBgn0260987 Length:715 Species:Drosophila melanogaster


Alignment Length:1062 Identity:223/1062 - (20%)
Similarity:359/1062 - (33%) Gaps:392/1062 - (36%)


- Green bases have known domain annotations that are detailed below.


plant     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLLLGVVR 65
            |||...||||||||..||:|||.::|:.|..|.:|:|..||:.||.|:..:|||.|.||||||||
  Fly     1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLLLGVVR 65

plant    66 IYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFELPD-NEIFQG 129
            |||||..||..||:||.:|:|.|||...||||.....|..::|||||.|...|..||: |:|...
  Fly    66 IYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTALPELNDIDIE 130

plant   130 NYVDHHVSTKEQITLQDTMDGVVYSTSQFGL-DERFGD----GDTSQ-----AALDLDEAVFQDK 184
            .....:.|..::||:::.     |.:....| |:.|||    .:|.:     ...::::.:| |.
  Fly   131 AQFSINQSRADEITMRED-----YGSLSLSLQDDGFGDIGFEAETPEIIRCSIPSNINDKIF-DN 189

plant   185 DVIGSDDEGVPGIDHNAYLDAAA--PGIKDSMEGVSEAMPMDFNEEQVEDLAMNNEFIEDAQAPQ 247
            ||:    |.:..:|.:: |||.|  ||.:...:|..::    |.:                    
  Fly   190 DVL----ENIESLDPHS-LDAHADMPGSRLDGDGFGDS----FGQ-------------------- 225

plant   248 TPGLVEVPNSSSVREQMACDDHMDVEDLNAEEGIKSSGELNANEMPKRGEDLSSEYNAPESAVTP 312
             |.|.|        :.:..|....||.:..|    |:..|||                       
  Fly   226 -PALFE--------DDLFGDPSQPVEQITKE----STTVLNA----------------------- 254

plant   313 VEVDKSQIDENVNTQNEPEEERAEHVH-VTSPCCSHITTEMEDPGQVMNEAGANVVPDKPDAVPP 376
                           ::.:|:..:::| |.||..|                              
  Fly   255 ---------------DDSDEDAIDNIHNVPSPATS------------------------------ 274

plant   377 LETPGEENRDHFAIATEVNQETDSSLQGDEQAYSRPDGQLNNAHETDEQLGNLTGFTD-SDFPPP 440
                                                   |.|:.|.:::..||.|... |:..|.
  Fly   275 ---------------------------------------LVNSIEDEKEENNLNGHASVSENVPM 300

plant   441 EKVLAVPNRQGDGNDFMVESTPDKEDPGTCNDDAGNNNITGKKRTFTESTLTAESLNSVESVGLI 505
            .::..|.|                ||.|                 |..:.|......     |:.
  Fly   301 NEITLVQN----------------EDEG-----------------FALAPLDVSMYK-----GVT 327

plant   506 QSKRTADSVPDDDDLLSSILVGKSSFLKMRPTPVLEPATTKRLRSAPRSTATKRKVLMDDPMVLH 570
            ::||                                                |||:::|:...:.
  Fly   328 KAKR------------------------------------------------KRKLIIDEIKNIS 344

plant   571 GDIIRQQLTNTEDIRRVRKKAPCTVPEIVMLQRQALEDGLFKEP--------IFTGMSVELVSLH 627
            |:.::.||.:|.||......||.|...:...:...:|. ||..|        :|...:.:|.|..
  Fly   345 GEEMKAQLADTSDILTTLDLAPPTKRLMYWKETGGVEK-LFSLPSRSIPARALFGNYNRQLFSHS 408

plant   628 TEPYDLRGIMIIENDDRHASVGAVE----DNECSVTAVEENKTEESSDPQAHPNDCEEQPGTAHT 688
            |...|...::.:|       :.|:|    :||.::....:...:..       ||........|.
  Fly   409 TFFEDFSSVVPME-------ILALEFYTKENENALIIFNKKGRKRK-------NDNMSNLFLDHV 459

plant   689 HPQEEQTINQQEELKDDNELAEKSDLE---VLKEGNGAADEVNLVVID-----DVSQIPSEEKLD 745
            .....|::...|.|:.:::....|.:.   |.||....:.:..|...|     |:..:...|:..
  Fly   460 PDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQNELTFFDNMRSPDLLSLNEMEQFS 524

plant   746 RVEDLQVEESHENHDGEGGQDVCADPNEKSCTDVIEIAEGDTDINPIFNEMDLKVEDELPHEDEK 810
            .:.:|.:...:.||  |.|.|                          ||:     .|..|...:.
  Fly   525 SINELPLTPRNMNH--EMGDD--------------------------FNQ-----GDSTPAGLDH 556

plant   811 TDASAEVSELGRDDQTPCDNTVGSTETGCLEAGDLSNMALENCNEPLVEANSDGLNPETESYNKY 875
            ..|:.:...:|..|.   |:.:.:.:|..:....:....|          :.:|::..|      
  Fly   557 GHATPQHGNIGEMDH---DSVIPTKKTAVILNESVGTSVL----------SDNGVSKRT------ 602

plant   876 EPHNEMSNEEASMQNALDG-EHTSRDGLMGDNDEMDTMENAHDTGFLNVDDDEVDEDHEEDDIQY 939
                         .|.|.| ::......:|.|...:.|||            |.||..||     
  Fly   603 -------------NNILKGWDNYEIPSFVGQNHGDEQMEN------------ETDEQFEE----- 637

plant   940 DDETRLLENSGWSSRTRAVAKYLQTLFDKETEN--GKNVLVADKLLAGKTRKEASRMFFETLVLK 1002
                            |.:.|....||.....:  .|:.|...:|.:|.:||:|::.|:..||||
  Fly   638 ----------------RVLNKRAAHLFIDVRAHFIAKDSLELSQLTSGNSRKQAAQKFYSLLVLK 686

plant  1003 TRDYIQVEQGKPYESIIIKPRP 1024
            ....:.::|..||..|.|...|
  Fly   687 KFKVLHIDQSAPYADITITRGP 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SYN4NP_197131.2 Rad21_Rec8_N 1..104 CDD:282655 58/102 (57%)
Rad21_Rec8 972..1026 CDD:282654 18/55 (33%)
vtdNP_001015132.1 Rad21_Rec8_N 1..106 CDD:282655 59/104 (57%)
Rad21_Rec8 657..710 CDD:282654 18/52 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 119 1.000 Domainoid score I1912
eggNOG 1 0.900 - - E1_KOG1213
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 178 1.000 Inparanoid score I1470
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001363
OrthoInspector 1 1.000 - - otm2907
orthoMCL 1 0.900 - - OOG6_103388
Panther 1 1.100 - - LDO PTHR12585
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1093
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.910

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