DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ATL43 and Rnf149

DIOPT Version :9

Sequence 1:	NP_196200.3	Gene:	ATL43 / 830466	AraportID:	AT5G05810	Length:	407	Species:	Arabidopsis thaliana
Sequence 2:	NP_001028307.2	Gene:	Rnf149 / 67702	MGIID:	2677438	Length:	394	Species:	Mus musculus

Alignment Length:	228	Identity:	64/228 - (28%)
Similarity:	91/228 - (39%)	Gaps:	64/228 - (28%)

- Green bases have known domain annotations that are detailed below.

plant    58 IAVVIAVLT-AFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGI 121
            :.|.||.:| ...||.:|:..|:               |||..|         |...|.:.:...
Mouse   198 VFVAIAFITMMIISLAWLIFYYI---------------QRFLYT---------GSQFGSQNHRKE 238

plant   122 DRSVIESLPV--FRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTC 184
            .:.||..||:  .:.|......|...||||:..|:..:|:|:|| |||.||..|:|.||..|.||
Mouse   239 TKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILP-CKHIFHRICIDPWLLDHRTC 302

plant   185 PLCR--------YRVDPEDI------------LLIGDCNSWFELQFSKDESNSVNNNPPGLTRFI 229
            |:|:        |..||||.            :.:|:.:     ..|:||..|.:|.|..
Mouse   303 PMCKLDVIKALGYWGDPEDTQELPTPEAAPGRVSVGNLS-----VTSQDEERSESNLPSS----- 357

plant   230 PVSRISGRH-----SSAGERASRLNEIRTSSSY 257
             .|..||.|     ..|||..:.|...|:...:
Mouse   358 -SSSESGPHRPCLKEDAGEDTALLGAGRSEPQH 389

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ATL43	NP_196200.3	RING-H2_EL5_like	145..188	CDD:319375	22/42 (52%)
Rnf149	NP_001028307.2	PA_GRAIL_like	45..181	CDD:239037
		UPF0233	<193..>220	CDD:299753	7/21 (33%)
		zf-RING_2	263..306	CDD:290367	22/43 (51%)
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	321..394		17/80 (21%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	62	1.000	Domainoid score	I4518
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.910