DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment ATL43 and hrd1

DIOPT Version :9

Sequence 1:	NP_196200.3	Gene:	ATL43 / 830466	AraportID:	AT5G05810	Length:	407	Species:	Arabidopsis thaliana
Sequence 2:	NP_596376.1	Gene:	hrd1 / 2539900	PomBaseID:	SPBC17D11.02c	Length:	677	Species:	Schizosaccharomyces pombe

Alignment Length:	189	Identity:	39/189 - (20%)
Similarity:	64/189 - (33%)	Gaps:	67/189 - (35%)

- Green bases have known domain annotations that are detailed below.

plant   146 CAVCLAR-FEP------TEVLRLLPK----------CKHAFHVECVDTWLDAHSTCPLCRYRVDP 193
            |.:|... |.|      |:.:..||:          |.|..|..|:..||:...|||:||..|
pombe   292 CTICREEMFHPDHPPENTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPICRRSV-- 354

plant   194 EDILLIGDCNS-------------WFELQFSKDESNSVNNNPPGLTRFIPVSRISGRHSSAGE-R 244
                 ||:.:|             ....|....::.......||:|          ..|:.|: :
pombe   355 -----IGNQSSPTGIPASPNVRATQIATQVPNPQNTPTTTAVPGIT----------NSSNQGDPQ 404

plant   245 ASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCLDRLQRKDGLLLIP 303
            ||..|.:..::|  |...:..:.|.|.:.                 .|:..:||..::|
pombe   405 ASTFNGVPNANS--SGFAAHTQDLSSVIP-----------------RRIALRDGWTMLP 444

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ATL43	NP_196200.3	RING-H2_EL5_like	145..188	CDD:319375	16/58 (28%)
hrd1	NP_596376.1	HRD1	1..514	CDD:227568	39/189 (21%)
hrd1	NP_596376.1	zf-RING_2	291..351	CDD:290367	16/58 (28%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910