DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT5G05280 and si:ch211-59o9.10

DIOPT Version :9

Sequence 1:NP_196147.1 Gene:AT5G05280 / 830410 AraportID:AT5G05280 Length:176 Species:Arabidopsis thaliana
Sequence 2:NP_001352283.1 Gene:si:ch211-59o9.10 / 561841 ZFINID:ZDB-GENE-101206-1 Length:474 Species:Danio rerio


Alignment Length:79 Identity:31/79 - (39%)
Similarity:48/79 - (60%) Gaps:2/79 - (2%)


- Green bases have known domain annotations that are detailed below.


plant    83 ANVAKG-IKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLL 146
            |.:||. :.|..::.:|:.:|.|......|:|.||..::..||.:|:|| |.|.:||||||.||.
Zfish   392 AVMAKNTLSKAEIERLPIKTYDPTHSAGKTDCQICFSEYKAGERLRMLP-CLHDYHVKCIDRWLK 455

plant   147 SHSSCPTCRQSLLE 160
            .:::||.||..:.|
Zfish   456 ENATCPICRADVSE 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT5G05280NP_196147.1 RING-H2_EL5_like 112..155 CDD:319375 20/42 (48%)
si:ch211-59o9.10NP_001352283.1 RING_Ubox 423..464 CDD:327409 20/41 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 65 1.000 Domainoid score I4358
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000414
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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