DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT5G05280 and SPBC15C4.06c

DIOPT Version :9

Sequence 1:NP_196147.1 Gene:AT5G05280 / 830410 AraportID:AT5G05280 Length:176 Species:Arabidopsis thaliana
Sequence 2:NP_595926.1 Gene:SPBC15C4.06c / 2539787 PomBaseID:SPBC15C4.06c Length:556 Species:Schizosaccharomyces pombe


Alignment Length:195 Identity:49/195 - (25%)
Similarity:76/195 - (38%) Gaps:48/195 - (24%)


- Green bases have known domain annotations that are detailed below.


plant    18 DANPRTLGDSVSNNKNIASMDTHMVIILAAL-LCALICALGINSVLRCVLRCTRR--FTPNEDPV 79
            ||..| ||..:|....:..:...:.::|..: :..|...|..:..:....|...|  ....|..|
pombe   363 DATAR-LGVIISKEPKLLGLYIFIGVLLGLIGVIGLFICLHFSGAMNGFYRLLNRHGIPVQERIV 426

plant    80 DTNANVAKG-IKKRALKVIPVDSYS-PEL-------------KMKAT------------------ 111
            :...|..:. :.|..|..:||..:| |.|             |:..:                  
pombe   427 NIGPNKPENRVTKEMLDTLPVRMFSGPHLANPNDELVYEKDWKLDKSESFDGQGNVVTTAERGSK 491

plant   112 -----ECLICLGDFVEGETV-RVLPKCNHGFHVKCIDTWLLSHSS-CPTCRQS---LLEHQTPAN 166
                 ||.|||.::.|...: |.|| |:|.||..|||.:||.:|. ||.|:||   :||:.:..|
pombe   492 YFDQRECTICLCEYSEESPLYRELP-CHHIFHPACIDPYLLKNSDLCPLCKQSVTNMLENASEDN 555

plant   167  166
            pombe   556  555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT5G05280NP_196147.1 RING-H2_EL5_like 112..155 CDD:319375 21/44 (48%)
SPBC15C4.06cNP_595926.1 zf-RING_2 497..541 CDD:290367 21/44 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000414
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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