DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT4G28370 and rnf149

DIOPT Version :10

Sequence 1:NP_194566.3 Gene:AT4G28370 / 828953 AraportID:AT4G28370 Length:562 Species:Arabidopsis thaliana
Sequence 2:XP_012812754.1 Gene:rnf149 / 780151 XenbaseID:XB-GENE-972101 Length:398 Species:Xenopus tropicalis


Alignment Length:47 Identity:14/47 - (29%)
Similarity:23/47 - (48%) Gaps:5/47 - (10%)


- Green bases have known domain annotations that are detailed below.


plant   511 DCVICMTAIDLRQHTSDCM-VTPCEHFFHSGCLQRWMDIKMECPTCR 556
            :|.:|:.    ...|.|.: :.||:|.||..|:..|:.....||.|:
 Frog   264 NCAVCIE----NYKTKDLVRILPCKHIFHRLCIDPWLIEHRTCPMCK 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT4G28370NP_194566.3 RING-H2_TUL1-like 506..561 CDD:438479 14/47 (30%)
rnf149XP_012812754.1 PA_GRAIL_like 34..181 CDD:239037
COG5540 <179..309 CDD:227827 14/47 (30%)
RING-H2_RNF149 264..311 CDD:438455 14/47 (30%)
Blue background indicates that the domain is not in the aligned region.

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