DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT4G28370 and RNF149

DIOPT Version :9

Sequence 1:NP_001328219.1 Gene:AT4G28370 / 828953 AraportID:AT4G28370 Length:562 Species:Arabidopsis thaliana
Sequence 2:XP_005263977.1 Gene:RNF149 / 284996 HGNCID:23137 Length:428 Species:Homo sapiens


Alignment Length:47 Identity:13/47 - (27%)
Similarity:24/47 - (51%) Gaps:5/47 - (10%)


- Green bases have known domain annotations that are detailed below.


plant   511 DCVICMTAIDLRQHTSDCM-VTPCEHFFHSGCLQRWMDIKMECPTCR 556
            :|.:|:....::    |.: :.||:|.||..|:..|:.....||.|:
Human   268 NCAVCIENFKVK----DIIRILPCKHIFHRICIDPWLLDHRTCPMCK 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT4G28370NP_001328219.1 DUF2921 <408..486 CDD:371393
zf-RING_2 510..556 CDD:372655 12/45 (27%)
RNF149XP_005263977.1 PA_GRAIL_like 43..185 CDD:239037
UPF0233 <204..>235 CDD:299753
zf-RING_2 267..310 CDD:290367 12/45 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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