DRSC/TRiP Functional Genomics Resources

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Protein Alignment RIN2 and amfra

DIOPT Version :10

Sequence 1:NP_194253.2 Gene:RIN2 / 828626 AraportID:AT4G25230 Length:578 Species:Arabidopsis thaliana
Sequence 2:NP_998328.3 Gene:amfra / 406442 ZFINID:ZDB-GENE-040426-2190 Length:620 Species:Danio rerio


Alignment Length:566 Identity:143/566 - (25%)
Similarity:231/566 - (40%) Gaps:143/566 - (25%)


- Green bases have known domain annotations that are detailed below.


plant    25 ELSLDRLRADGLIAKNISLGDSEHALELLLGSYFTIALLTNFVLNVYILLVLSLKTLFFGDLYDV 89
            ||.|:.|   |.:|..:       .|.|:..|.| :.::.|....:.:|:...::.:.||.|...
Zfish    53 ELKLENL---GNVATGV-------LLHLITDSLF-VWVMVNTACCILMLIGKVIQCIVFGPLRVS 106

plant    90 ETKKLVERLANYIIYKGTFLPLVI-PPTIFQGVLWTVWLTVLCTLKMFQALARDRLERLNASPSS 153
            |.:.|.::..|:|.||..|:..|: ...:.:.|||.:|.::|..|.:...|.:||.|.|:.||::
Zfish   107 EKQHLKDKFWNFIFYKFIFIFGVLNVQRVEEVVLWCLWFSMLIFLHLMVQLCKDRFEYLSFSPTT 171

plant   154 TPWTYFRVYSVLFLVLSVDMFWIKLSLMTYNTIGSAVYLLLLFEPCSIAFETLQALLIHGFQLLD 218
            ...::.||.::|..|||.......|..:..:..|......:..|...:...|...::.:...|.|
Zfish   172 PMSSHVRVLALLVSVLSCCGGLAVLCALAGHIHGMHTVAFMAAECLLVTVRTGHVIIRYSIHLWD 236

plant   219 MWINHLAVKNSDCQRSKFIDSMTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWWLHGIAF 283
              :||.....:......:.|                   |.:::|.|.:.|.|::|:.....|..
Zfish   237 --LNHEGTWENKSSYIYYTD-------------------FIMELAILSLDLMHHIHMLLFGNIWL 280

plant   284 HLVDAVLFLNIRALLSAILKRI---KGYIKLRIALGALHAALPDATSEELRAYDDECAICREPMA 345
            .:...|:|:.:|.|...:.:||   |.|:::   :..:.:....||.|||.|.:|:||||.:.|.
Zfish   281 SMASLVIFMQLRHLFHEVQRRIRRHKNYLRV---IDNMESRFAVATPEELAANNDDCAICWDSMT 342

plant   346 KAKRLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLFV--GRTENEVNPRTVEVSSDEQLARQL 408
            .|::|.|.||||..||||||:|..    ||||||..|.:  ||.|.|                  
Zfish   343 TARKLPCGHLFHNSCLRSWLEQDT----SCPTCRMSLNIHEGRRERE------------------ 385

plant   409 ERQNNPV--HALATGLFPAEVPDSVEN-----DTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTV 466
            |.|..|:  :..|.|...|....:..|     |.||    ..|||.::|                
Zfish   386 EGQREPLEDNMAAAGAADARAHINQHNHFFHFDGSR----IASWLPSFS---------------- 430

plant   467 GLGRVQMMMRHLASVGESYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNGGRTGGLHLRTVSNT 531
                |::|  |..::                  :..:||:.|..     ||              
Zfish   431 ----VEVM--HTTNI------------------LGIAQANNSQL-----NG-------------- 452

plant   532 TNESLTNILAMAETVREVMPHVPDEIIFQDLQRTNSVAVTVNNLLQ 577
                      ||..::|:.|.||..:|.||||.|.||.||.:|:|:
Zfish   453 ----------MAHQIQEMFPQVPYHLILQDLQLTRSVEVTTDNILE 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RIN2NP_194253.2 HRD1 56..>382 CDD:227568 90/329 (27%)
RING-H2_AMFR 335..382 CDD:438119 26/46 (57%)
CUE_RIN3_plant 539..576 CDD:270605 17/36 (47%)
amfraNP_998328.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 510..544
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 569..598
Blue background indicates that the domain is not in the aligned region.

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