DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RIN2 and AMFR

DIOPT Version :9

Sequence 1:NP_001328533.1 Gene:RIN2 / 828626 AraportID:AT4G25230 Length:578 Species:Arabidopsis thaliana
Sequence 2:NP_001310441.1 Gene:AMFR / 267 HGNCID:463 Length:675 Species:Homo sapiens


Alignment Length:560 Identity:142/560 - (25%)
Similarity:229/560 - (40%) Gaps:106/560 - (18%)


- Green bases have known domain annotations that are detailed below.


plant    30 RLRADGLIAKNISLGDSEHALELLLGSYFTIALLTNFVLNVYILLVLSLKTLFFGDLYDVETKKL 94
            |..|.|..|::::        :.||.....:.:|.|....|.:|:...::.:.||.|...|.:.|
Human    62 RPSAGGPRARDVA--------QYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHL 118

plant    95 VERLANYIIYKGTFLPLVI-PPTIFQGVLWTVWLTVLCTLKMFQALARDRLERLNASPSSTPWTY 158
            .::..|:|.||..|:..|: ..|:.:.|:|.:|...|..|.:...|.:||.|.|:.||::...::
Human   119 KDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSH 183

plant   159 FRVYSVLFLVLSVDMFWIKLSLMTYNTIGSAVYLLLLFEPCSIAFETLQALLIHGFQLLDMWINH 223
            .||.|:|..:|........:..:|..|.|......:..|...:...|...:|.:...|.|  :||
Human   184 GRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIHLWD--LNH 246

plant   224 LAVKNSDCQRSKFIDSMTAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWWLHGIAFHLVDA 288
                               ....|.||.......|.:::..|.:.|.|::|:.....|...:...
Human   247 -------------------EGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASL 292

plant   289 VLFLNIRALLSAILKRI---KGYIKLRIALGALHAALPDATSEELRAYDDECAICREPMAKAKRL 350
            |:|:.:|.|...:.:||   |.|:::   :|.:.|....||.|||...:|:||||.:.|..|::|
Human   293 VIFMQLRYLFHEVQRRIRRHKNYLRV---VGNMEARFAVATPEELAVNNDDCAICWDSMQAARKL 354

plant   351 HCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLFVG-----RTENE---VNPRTVEVSSDEQLARQ 407
            .|.||||..||||||:|..    ||||||..|.:.     |.|::   ::...|.|::.|...| 
Human   355 PCGHLFHNSCLRSWLEQDT----SCPTCRMSLNIADNNRVREEHQGENLDENLVPVAAAEGRPR- 414

plant   408 LERQNNPVHALATGLFPAEVPDSVENDTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTVGLGRVQ 472
            |.:.|:..|                                  ..|.|.:...|....|      
Human   415 LNQHNHFFH----------------------------------FDGDDSSMRVTAPEDV------ 439

plant   473 MMMRHLASVGESYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNGGRTGGLHLRTVSNTTNESLT 537
                   .||:.......|..|..||....|...:.|..|          :|...:...|..|.:
Human   440 -------PVGQEVEVVDSDTDAPDLWSRIASWLPSFSVEV----------MHTTNILGITQASNS 487

plant   538 NILAMAETVREVMPHVPDEIIFQDLQRTNSVAVTVNNLLQ 577
            .:.|||..::|:.|.||..::.||||.|.||.:|.:|:|:
Human   488 QLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 527



Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 178 1.000 Inparanoid score I1850
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D897451at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105132
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3836
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.770

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