Protein Alignment RIN2 and hrdl-1

DIOPT Version :9

• Sequence 1: NP_001328533.1
• Gene: RIN2 / 828626
• AraportID: AT4G25230
• Length: 578
• Species: Arabidopsis thaliana
• Sequence 2: NP_492602.2
• Gene: hrdl-1 / 172833
• WormBaseID: WBGene00009164
• Length: 579
• Species: Caenorhabditis elegans
• Alignment Length: 615
• Identity: 124/615 - (20%)
• Similarity: 205/615 - (33%)
• Gaps: 219/615 - (35%)

plant     8 VSVASTALSFVGLQVWTELSLDRLRADGLIAKNISLGDSEHALELLLG-SYFTIALLTNFVLNVY 71
            |:|.:|..|...||   :|..:.||.:..::....|.     :|.|.| ::|.||   :::|:..
 Worm    46 VTVFTTFRSQPELQ---KLIEEELRNNTRLSSAYGLN-----IEALSGHTFFQIA---HYILSDT 99

plant    72 ILLVLSLKTLF--------------FGDLYDVETKKLVERLANYIIYKGTFLPLVIPPTIFQGVL 122
            .|:.:::.:.|              |.:|...|.....:....|::....:|.:||.|.....|:
 Worm   100 TLIWVAINSYFAILAVCTRLIIKLTFKELARQEENVARQAFFCYVLLTIVYLSVVIGPQKGHRVM 164

plant   123 -WTVWLTVLCTLKMFQALARDRLERLNASPSSTPWTYFRVYSVLFL-VLSVDMFWIKLSLMTYNT 185
             |.:|..:...|...|.:...||:.:  |||....:....:..||| .:|:.|.::......:.|
 Worm   165 PWMIWGGICAFLSHLQFITCQRLKHI--SPSCDRGSQKISFLSLFLFFVSIAMTFLISRFQHHLT 227

plant   186 IGSAVY-----LLLLFEPCSIAFETLQALLIHGF-----QLLDMWINHLAVKNSDCQRSKFIDSM 240
            ...||.     ||.:|....|.|..:.:..:..|     :..:.|:.  .:.|..|:   .|..:
 Worm   228 WQPAVLLYFDCLLAVFRSTYILFRCISSSRVFSFNPDSVRHFNYWLE--LITNFVCE---LIQML 287

plant   241 TAGSLLEWKGLLNRNLGFFLDMATLVMALGHYLHIWW---LHGIAFHLVDAVLFLNIRALLSAIL 302
            :...||.:...||....|||          :::.:.:   ...::.|.....:|.:|.
 Worm   288 SFAQLLAFSPGLNLTSIFFL----------YHMKLTYNCMTEQLSRHRNHKKIFEHIE------- 335

plant   303 KRIKGYIKLRIALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCNHLFHLGCLRSWLDQ 367
               :.|..::.|.|                 ||.|.:|.|.:..::||.|:|.||..||..||.|
 Worm   336 ---RSYPSVKCANG-----------------DDRCVVCWELLGTSRRLPCSHQFHDWCLMWWLAQ 380

plant   368 GLNEVYSCPTCRKPLFVGRTENEVNPRTVEVSSDEQLARQLERQNNPVHALATGLFPAEVPDSVE 432
            .    .||||||                ..:.|.:...||                |.||
 Worm   381 D----SSCPTCR----------------CTIPSPQDQIRQ----------------PPEV----- 404

plant   433 NDTSRNLGLDPSWLQTWSSQGSDVAGPSTTSRTVGLGRVQMMMRHLASVGESYAQTALDDAAWSL 497
                                     |.||..|.
 Worm   405 -------------------------GNSTRLRF-------------------------------- 412

plant   498 WPMNPSQASTSSTTVPPGNGGRTGGLH-----LRTVSN----------TTNESLTNILAMAETVR 547
                              |||..|.:|     |...:|          .|.|.|..:|   |.||
 Worm   413 ------------------NGGSFGFVHFPAFTLEVAANFGPFFGRAAEPTEEQLQTML---EQVR 456

plant   548 EVMPHVPDEIIFQDLQRTNSVAVTVNNLLQ 577
            |:.|.:..:||..||:::.|...|:.|:|:
 Worm   457 EMFPQMSVDIIMTDLRQSGSAQSTIENILE 486

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RIN2	NP_001328533.1	None
hrdl-1	NP_492602.2	HRD1	<200..>407	CDD:227568	60/314 (19%)
		zf-RING_2	348..388	CDD:290367	19/43 (44%)
		CUE_AMFR	449..489	CDD:270604	14/41 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5243
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	84	1.000	Inparanoid score	I2092
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D897451at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_105132
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X3836
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.770