DRSC/TRiP Functional Genomics Resources

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Protein Alignment VSR7 and zgc:175214

DIOPT Version :9

Sequence 1:NP_001190777.1 Gene:VSR7 / 827757 AraportID:AT4G20110 Length:628 Species:Arabidopsis thaliana
Sequence 2:NP_001108199.1 Gene:zgc:175214 / 557610 ZFINID:ZDB-GENE-080303-32 Length:155 Species:Danio rerio


Alignment Length:93 Identity:18/93 - (19%)
Similarity:28/93 - (30%) Gaps:35/93 - (37%)


- Green bases have known domain annotations that are detailed below.


plant   529 CSGCRCKNSWGGYKCSCSGDRLY---INDQDTCIERYGSKTAWWLTFLILAIVAVAGLAGYIFYK 590
            |:||.|........|..:.:.:|   :|                :..::|.|.....:...||..
Zfish     7 CNGCLCGLGLQHSDCDMTEEDIYRLPLN----------------VYVIVLGIGMFIFMLSVIFCC 55

plant   591 YRFRSYMDSEIMTIMSQYMPLESQRARE 618
            |.||                |:.|..||
Zfish    56 YLFR----------------LKQQGTRE 67

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSR7NP_001190777.1 PA_VSR 53..176 CDD:239040
VESA1_N <494..>564 CDD:289551 7/37 (19%)
EGF_CA 517..>545 CDD:238011 5/15 (33%)
zgc:175214NP_001108199.1 zf-RING_2 90..130 CDD:290367
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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