DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VSR7 and znrf3

DIOPT Version :9

Sequence 1:NP_001190777.1 Gene:VSR7 / 827757 AraportID:AT4G20110 Length:628 Species:Arabidopsis thaliana
Sequence 2:NP_001295484.1 Gene:znrf3 / 556813 ZFINID:ZDB-GENE-070705-263 Length:866 Species:Danio rerio


Alignment Length:379 Identity:88/379 - (23%)
Similarity:120/379 - (31%) Gaps:138/379 - (36%)


- Green bases have known domain annotations that are detailed below.


plant   280 ENLRQL-CVHRVANESSRPWVWWDYVTDFHSRCSMKEKKYSIDCAESYESLRLFSDLPIEKIKKC 343
            |.||.: |.||...:...||: ..:.|..|.|.::.::|.                         
Zfish   276 EELRVIPCAHRFHKKCVDPWL-LQHHTCPHCRHNIIDQKK------------------------- 314

plant   344 IGDPEA---DTENQVLRTEQ-----VSQIGRGNR-GDVTILPT-------------LVINNAQYR 386
             |:|.|   |..|.|...:|     |...||.:| |.||..||             |.::....:
Zfish   315 -GNPGAVCLDPGNPVHGRQQRVVLPVHYPGRVHRAGQVTAYPTRTSMDPHGNPITVLTVDQHPEQ 378

plant   387 GRLERTAVLKAICAGFNETSEPAICLNTGLETNEC-LENNGGCWQDTKANITACQDTFRGR---- 446
            |.....:   :...|:     ||:.|:..|..:.| ||:.|..:..|.   |..:..|.||    
Zfish   379 GLYPSQS---SFIRGY-----PALHLDHTLNPHHCGLEHRGPAYPQTH---TFKRPKFHGRNFSR 432

plant   447 -LCECPVVKGVQ-YKGDGYTSCTPYGPARCTMNNG---GCWSDTRNGLTF-----------SACS 495
             .|........| |...|.|...|.|..    :||   |.....:.||.:           |...
Zfish   433 AACFSQYETMYQHYYFQGLTFPQPEGQP----SNGLHKGHNRPFQPGLLYPTVVHMAPASSSRLG 493

plant   496 DSVST-GCKCPEGFQGDGLTCEDINECKERSVC-----QCSG---------CRCKNSWGGYKC-- 543
            ||.|| |..|..|               .||||     .|.|         |.|.:|.....|  
Zfish   494 DSGSTSGLSCYHG---------------HRSVCSGYLADCPGSDSSSSSGQCHCSSSDSMLDCTE 543

plant   544 --------SCSGDRLYI-NDQDTCIERYGSKTAWWLTFLILAIVAVAGLAGYIF 588
                    |||..|..: :|.|..:  |.||:         .....||.||.:|
Zfish   544 VSNQGVYGSCSTFRSSLSSDYDPYV--YRSKS---------PCRGSAGEAGAVF 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSR7NP_001190777.1 PA_VSR 53..176 CDD:239040
VESA1_N <494..>564 CDD:289551 24/95 (25%)
EGF_CA 517..>545 CDD:238011 10/51 (20%)
znrf3NP_001295484.1 zf-RING_2 265..306 CDD:290367 10/30 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 790..811
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.