DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment VSR7 and Matn2

DIOPT Version :9

Sequence 1:NP_001190777.1 Gene:VSR7 / 827757 AraportID:AT4G20110 Length:628 Species:Arabidopsis thaliana
Sequence 2:NP_001345709.1 Gene:Matn2 / 17181 MGIID:109613 Length:956 Species:Mus musculus


Alignment Length:565 Identity:109/565 - (19%)
Similarity:171/565 - (30%) Gaps:246/565 - (43%)


- Green bases have known domain annotations that are detailed below.


plant   164 QGF--QKGKNIVIKLDWRESVPHPDKRVEYELWTNSNDECGARCDEQMDFVKNFKGHAQILEKGG 226
            :||  ...|....|:|:..|..|   ..::|. .|:......||      :|.|     :|....
Mouse   348 EGFALNSDKKTCSKIDYCASSNH---GCQHEC-VNAQTSALCRC------LKGF-----MLNPDR 397

plant   227 YTAFTPHYITWFCPFQFINSPHCKSQCIN--HGRYCAPDPEDNFREGYEGKDVVLENLRQLC--V 287
            .|....:|..       :|.|.|:.:|:|  .|.||      ..|:||.     |:...:.|  |
Mouse   398 KTCRRINYCA-------LNKPGCEHECVNTEEGHYC------RCRQGYN-----LDPNGKTCSRV 444

plant   288 HRVANESSRPWVWWDYVTDFHSRCSMKEKKYSIDCAESYESLRLFSDLPIEKIKKCIGDPEADTE 352
            ...|.:        |:..:  ..|...|:.:...|:|.:    |.:|    .:|.|         
Mouse   445 DHCAQQ--------DHGCE--QLCLNTEESFVCQCSEGF----LIND----DLKTC--------- 482

plant   353 NQVLRTEQVSQIGRGNRGDVTILPTLVINNAQYRGRLERTAVLKAICAGFNETSEPAICLNTGLE 417
                                        :.|.|                                
Mouse   483 ----------------------------SRADY-------------------------------- 487

plant   418 TNECLENNGGCWQDTKANITACQDTFRGRLCECPVVKGVQYKGDGYTSCTPYGPARCTMNNGGCW 482
               ||.:|.||..       :|.:|.:...|:||  :|...:.||.| |....  .|.:.:.|| 
Mouse   488 ---CLLSNHGCEY-------SCVNTDKSFACQCP--EGHVLRSDGKT-CAKLD--SCALGDHGC- 536

plant   483 SDTRNGLTFSACSDSVSTGCKCPEGF--QGDGLT------CEDIN-------------------- 519
                   ..|..|...|..|:|.||:  :.||.|      |:|:|                    
Mouse   537 -------EHSCVSSEDSFVCQCFEGYILRDDGKTCRRKDVCQDVNHGCEHLCVNSGESYVCKCLE 594

plant   520 ---------ECKERSVCQCS--GCR--CKNSWGGYKCSCSGDRLYINDQDTC------------- 558
                     .|:.::||:.:  ||.  |.|:...|.|.||...:...|...|             
Mouse   595 GFRLAEDGKRCRRKNVCKSTQHGCEHMCVNNGNSYLCRCSEGFVLAEDGKHCKRCTEGPIDLVFV 659

plant   559 IERYGSKT---------AWWLTFLI--LAIVAVAGLAGYIFYKYRFRS----------------- 595
            |:  |||:         ..::|.:|  ||:...|...|.:.|..:.|:                 
Mouse   660 ID--GSKSLGEENFETVKHFVTGIIDSLAVSPKAARVGLLQYSTQVRTEFTLRGFSSAKEMKKAV 722

plant   596 ----YMDSEIMTIMS-------QYMPLESQR--AREVPSEAEPFT 627
                ||....||.::       .:..:|..|  :.:||..|..||
Mouse   723 THMKYMGKGSMTGLALKHMFERSFTQVEGARPPSTQVPRVAIVFT 767

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSR7NP_001190777.1 PA_VSR 53..176 CDD:239040 3/13 (23%)
VESA1_N <494..>564 CDD:289551 26/123 (21%)
EGF_CA 517..>545 CDD:238011 11/60 (18%)
Matn2NP_001345709.1 vWA_Matrilin 54..276 CDD:238752
FXa_inhibition 283..318 CDD:317114
FXa_inhibition 324..359 CDD:317114 3/10 (30%)
FXa_inhibition 365..400 CDD:317114 9/49 (18%)
FXa_inhibition 406..441 CDD:317114 12/52 (23%)
vWFA <438..481 CDD:320736 10/60 (17%)
FXa_inhibition 488..523 CDD:317114 14/44 (32%)
vWFA <520..563 CDD:320736 15/53 (28%)
FXa_inhibition 570..605 CDD:317114 3/34 (9%)
vWFA <602..644 CDD:320736 12/41 (29%)
vWFA 652..892 CDD:320736 23/118 (19%)
Matrilin_ccoil 911..953 CDD:313592
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1618
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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