DRSC/TRiP Functional Genomics Resources

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Protein Alignment VSR7 and RNF145

DIOPT Version :9

Sequence 1:NP_001190777.1 Gene:VSR7 / 827757 AraportID:AT4G20110 Length:628 Species:Arabidopsis thaliana
Sequence 2:NP_001186309.1 Gene:RNF145 / 153830 HGNCID:20853 Length:693 Species:Homo sapiens


Alignment Length:123 Identity:31/123 - (25%)
Similarity:42/123 - (34%) Gaps:44/123 - (35%)


- Green bases have known domain annotations that are detailed below.


plant   370 GDVTILPTLVI-----NNAQYRGR-------LERTAVLKAICAGFNETSEPAICLNTGLETNECL 422
            |:.|::.:::|     .|...|.:       |.|.||.|.       .|.|       :.|.|.|
Human   510 GEWTVMGSMIIFIHSYYNVWLRAQLGWKSFLLRRDAVNKI-------KSLP-------IATKEQL 560

plant   423 ENNGG----CWQDTK-ANITACQDTFRG-------------RLCECPVVKGVQYKGDG 462
            |.:..    |:||.| |.||.|...|..             .||.|.:....|..|.|
Human   561 EKHNDICAICYQDMKSAVITPCSHFFHAGCLKKWLYVQETCPLCHCHLKNSSQLPGLG 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSR7NP_001190777.1 PA_VSR 53..176 CDD:239040
VESA1_N <494..>564 CDD:289551
EGF_CA 517..>545 CDD:238011
RNF145NP_001186309.1 TRC8_N 38..536 CDD:290425 5/25 (20%)
zf-rbx1 <564..605 CDD:289448 10/40 (25%)
zf-RING_2 565..605 CDD:290367 10/39 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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