DRSC/TRiP Functional Genomics Resources

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Protein Alignment VSR7 and umod.3

DIOPT Version :10

Sequence 1:NP_001190777.1 Gene:VSR7 / 827757 AraportID:AT4G20110 Length:628 Species:Arabidopsis thaliana
Sequence 2:XP_031749567.1 Gene:umod.3 / 100491428 XenbaseID:XB-GENE-855715 Length:943 Species:Xenopus tropicalis


Alignment Length:102 Identity:33/102 - (32%)
Similarity:51/102 - (50%) Gaps:15/102 - (14%)


- Green bases have known domain annotations that are detailed below.


plant   461 DGYTSCTPYGPARCTMNNGGCWSDTRNGLTFSACSDSVS-TGCKCPEGFQGDGLTCEDINECKER 524
            :|:|:......|||        ||..   |.::|.:::. ..|.|.:||.|||.||.|::||...
 Frog   323 EGFTASNISSAARC--------SDCH---TNASCEEALGILQCLCKDGFIGDGFTCSDVDECAYS 376

plant   525 SVCQCSGCRCKNSWGGYKCSC-SGDRLYINDQDTCIE 560
            ....||...|||::|.|.|.| .|.:..:  .:||::
 Frog   377 WSNNCSSGICKNTFGSYICDCRPGYKKTL--ANTCVD 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSR7NP_001190777.1 PA_VSR 53..176 CDD:239040
cEGF 502..520 CDD:463661 10/17 (59%)
EGF_CA 517..>545 CDD:238011 11/27 (41%)
umod.3XP_031749567.1 ChlD <45..227 CDD:440853
EGF_3 338..367 CDD:463759 10/31 (32%)
EGF_CA 369..>401 CDD:214542 12/31 (39%)
EGF_CA 411..446 CDD:238011 0/1 (0%)
Zona_pellucida 641..893 CDD:459673
Blue background indicates that the domain is not in the aligned region.

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