DRSC/TRiP Functional Genomics Resources

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Protein Alignment VSR7 and umod.3

DIOPT Version :9

Sequence 1:NP_001190777.1 Gene:VSR7 / 827757 AraportID:AT4G20110 Length:628 Species:Arabidopsis thaliana
Sequence 2:XP_031749567.1 Gene:umod.3 / 100491428 XenbaseID:XB-GENE-855715 Length:943 Species:Xenopus tropicalis


Alignment Length:102 Identity:33/102 - (32%)
Similarity:51/102 - (50%) Gaps:15/102 - (14%)


- Green bases have known domain annotations that are detailed below.


plant   461 DGYTSCTPYGPARCTMNNGGCWSDTRNGLTFSACSDSVS-TGCKCPEGFQGDGLTCEDINECKER 524
            :|:|:......|||        ||..   |.::|.:::. ..|.|.:||.|||.||.|::||...
 Frog   323 EGFTASNISSAARC--------SDCH---TNASCEEALGILQCLCKDGFIGDGFTCSDVDECAYS 376

plant   525 SVCQCSGCRCKNSWGGYKCSC-SGDRLYINDQDTCIE 560
            ....||...|||::|.|.|.| .|.:..:  .:||::
 Frog   377 WSNNCSSGICKNTFGSYICDCRPGYKKTL--ANTCVD 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSR7NP_001190777.1 PA_VSR 53..176 CDD:239040
VESA1_N <494..>564 CDD:289551 25/69 (36%)
EGF_CA 517..>545 CDD:238011 11/27 (41%)
umod.3XP_031749567.1 EGF_3 338..367 CDD:403986 10/31 (32%)
EGF_CA 369..>401 CDD:214542 12/31 (39%)
EGF_CA 411..446 CDD:238011 0/1 (0%)
Zona_pellucida 640..893 CDD:421542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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