DRSC/TRiP Functional Genomics Resources

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Protein Alignment VSR7 and pradc1

DIOPT Version :9

Sequence 1:NP_001190777.1 Gene:VSR7 / 827757 AraportID:AT4G20110 Length:628 Species:Arabidopsis thaliana
Sequence 2:XP_002936318.1 Gene:pradc1 / 100488108 XenbaseID:XB-GENE-1003968 Length:192 Species:Xenopus tropicalis


Alignment Length:125 Identity:31/125 - (24%)
Similarity:52/125 - (41%) Gaps:21/125 - (16%)


- Green bases have known domain annotations that are detailed below.


plant    37 VLNPEEMRSKHDGSIANFGLPDYGGFLIGSV----VYPDSKTDGCSAFGKTFKPKFPRPTILLLD 97
            ||:|.:::.....:.|.    |:||......    :.|....:.|   |:.....|.:..|.|::
 Frog    38 VLSPGDIQYIFTATPAK----DFGGIFNQRYDQIHLVPADPLEAC---GELNNGAFIQGEIALVE 95

plant    98 RGGCYFALKAWHAQQAGAAAVLVADNV---DEPLLTMDSPEESKDADGFIEKLTIPSVLI 154
            ||||.|..|....|:.|..||::|||.   |...:.|.:....:..|       ||::.:
 Frog    96 RGGCSFLSKTRVIQEHGGLAVIIADNASDNDSRYVDMINDNSGRTVD-------IPALFL 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSR7NP_001190777.1 PA_VSR 53..176 CDD:239040 27/109 (25%)
VESA1_N <494..>564 CDD:289551
EGF_CA 517..>545 CDD:238011
pradc1XP_002936318.1 PA_hPAP21_like 55..172 CDD:239042 27/104 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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