DRSC/TRiP Functional Genomics Resources

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Protein Alignment VSR7 and si:dkey-51a16.9

DIOPT Version :9

Sequence 1:NP_001190777.1 Gene:VSR7 / 827757 AraportID:AT4G20110 Length:628 Species:Arabidopsis thaliana
Sequence 2:XP_001344370.3 Gene:si:dkey-51a16.9 / 100005267 ZFINID:ZDB-GENE-030616-560 Length:132 Species:Danio rerio


Alignment Length:133 Identity:34/133 - (25%)
Similarity:42/133 - (31%) Gaps:56/133 - (42%)


- Green bases have known domain annotations that are detailed below.


plant   163 RQGFQK--GKNIVIKLDWRESVPHPDKRVEYELWT--------NSNDECGARCDEQMDFVKNFKG 217
            |||.|:  |.|.|:       :..|.|::.....|        .|.||.|. |.....|      
Zfish    40 RQGTQEQYGYNEVV-------LKGPGKKLSLLGQTCAVCLEEFRSRDELGV-CPCSHAF------ 90

plant   218 HAQILEKGGYTAFTPHYITWF-----CPFQFINSPHCKSQCINHGRYCAPDPEDNFREGYEGKDV 277
            |.:.|.|            |.     ||  ..|.|.|:.|         |||.    :|.||...
Zfish    91 HKKCLVK------------WLEIRSVCP--MCNKPICRLQ---------PDPP----QGAEGPQN 128

plant   278 VLE 280
            .||
Zfish   129 PLE 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VSR7NP_001190777.1 PA_VSR 53..176 CDD:239040 7/14 (50%)
VESA1_N <494..>564 CDD:289551
EGF_CA 517..>545 CDD:238011
si:dkey-51a16.9XP_001344370.3 zf-RING_2 67..108 CDD:290367 13/61 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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