DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment ChiC and Cht10

DIOPT Version :9

Sequence 1:	NP_001319999.1	Gene:	ChiC / 827725	AraportID:	AT4G19810	Length:	379	Species:	Arabidopsis thaliana
Sequence 2:	NP_001036422.1	Gene:	Cht10 / 3355116	FlyBaseID:	FBgn0250907	Length:	2286	Species:	Drosophila melanogaster

Alignment Length:	367	Identity:	112/367 - (30%)
Similarity:	170/367 - (46%)	Gaps:	46/367 - (12%)

- Green bases have known domain annotations that are detailed below.

plant    27 VVKASY----------WFPASE--FPVTDIDSSLFTHLFCAFADLNSQTNQV-TVSSANQPKFST 78
            ::..||          |:.:|:  |...|||::|.|||...||.|:|::..: |..|........
  Fly  1903 IINNSYKVVCYFTSWAWYRSSQGKFVPEDIDANLCTHLIYGFAVLDSKSLTIKTHDSWTDIDNRF 1967

plant    79 FTQTVQRRNPSVKTLLSIGG---GIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWE 140
            :.:.|:.:...::.:|:|||   .:..|  ||.:..|..||:.|:.|.|.....:||.||||.||
  Fly  1968 YERVVEYKQRGLRVMLAIGGWNDSLGSK--YARLVLNSQSRRRFVASVISFLEQHGFEGLDLAWE 2030

plant   141 YP---------SSATEMTNFGTLLREWRSAVVAEA-SSSGKPRLLLAAAVFYSNNYYSVLYPVSA 195
            :|         .:.||...|..|::|     ::|| ..:|   |:|:|||..|.......|.|..
  Fly  2031 FPVCWQVNCNRGNPTEKDGFVALVKE-----LSEAFKENG---LILSAAVSPSKMVIDAGYNVFE 2087

plant   196 VASSLDWVNLMAYDFYGPGWSRVTGPPAALF---DPSNAGPSGDAGTRSWIQAGLPAKKAVLGFP 257
            ::...|||.:|.|||:| .|...||..|.||   ...|...:|:.....|::.|:|..|.|:|.|
  Fly  2088 LSPYFDWVAVMTYDFHG-HWDMRTGQIAPLFHRGGDENLYLNGNFSIHYWLERGIPNDKLVMGMP 2151

plant   258 YYGYAWRLTNANSHSYYAPTTGAA-----ISPDGSIGYGQIRKFIVDNGATTVYNST-VVGDYCY 316
            .||..:.|.:.|..|....|.|..     ...||.:.|.:|.:.:|::....|.:.. :.|.|.|
  Fly  2152 MYGQTFTLADQNRRSLNDKTVGPGKAGTFTRADGFLAYYEICEKVVNDDWKVVRDEEGIFGSYAY 2216

plant   317 AGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGL 358
            :|..||.|||..:|..|.::.|...|.|...|.:..||..||
  Fly  2217 SGNQWISYDDVTTIRRKSQFIKSLQLGGGMIWALDLDDFRGL 2258

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
ChiC	NP_001319999.1	GH18_plant_chitinase_class_V	25..359	CDD:119358	112/367 (31%)
Cht10	NP_001036422.1	Glyco_18	220..565	CDD:214753
		GH18_chitolectin_chitotriosidase	221..586	CDD:119351
		ChtBD2	697..737	CDD:214696
		CBM_14	801..848	CDD:279884
		CBM_14	875..918	CDD:279884
		Glyco_18	966..1310	CDD:214753
		GH18_chitolectin_chitotriosidase	967..1331	CDD:119351
		Glyco_18	1410..1753	CDD:214753
		GH18_chitolectin_chitotriosidase	1411..1774	CDD:119351
		ChtBD2	1834..1871	CDD:214696
		Glyco_18	1909..2253	CDD:214753	106/354 (30%)
		GH18_chitolectin_chitotriosidase	1910..2274	CDD:119351	110/360 (31%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	188	1.000	Domainoid score	I962
eggNOG	1	0.900	-	-		E1_COG3325
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D826687at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	1	1.000	-	-		mtm1002
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11177
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.920