DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT4G19720 and Cht10

DIOPT Version :9

Sequence 1:NP_001319998.1 Gene:AT4G19720 / 827716 AraportID:AT4G19720 Length:363 Species:Arabidopsis thaliana
Sequence 2:NP_001036422.1 Gene:Cht10 / 3355116 FlyBaseID:FBgn0250907 Length:2286 Species:Drosophila melanogaster


Alignment Length:375 Identity:102/375 - (27%)
Similarity:170/375 - (45%) Gaps:56/375 - (14%)


- Green bases have known domain annotations that are detailed below.


plant     5 VVKASY----------WFPDGASSPTTGSVVPQSSAVLIDSTLFTHLFCAFADLDPQTNSVVVSG 59
            ::..||          |:     ..:.|..||:.    ||:.|.|||...||.||.::.::   .
  Fly  1903 IINNSYKVVCYFTSWAWY-----RSSQGKFVPED----IDANLCTHLIYGFAVLDSKSLTI---K 1955

plant    60 AHEQ--EFSN--FTKIVKKKNPHVQTLLSIGGRNAD-KSAFASMASNPTSRKSFIWSAISSARYY 119
            .|:.  :..|  :.::|:.|...::.:|:|||.|.. .|.:|.:..|..||:.|:.|.||....:
  Fly  1956 THDSWTDIDNRFYERVVEYKQRGLRVMLAIGGWNDSLGSKYARLVLNSQSRRRFVASVISFLEQH 2020

plant   120 RFDGLDLVWKYP---------KDDVEMRNFGQLLEQWREAIEDDAERTERMPLLLTAAVYYSPVY 175
            .|:||||.|::|         .:..|...|..|:::..||.:::.       |:|:|||..|.:.
  Fly  2021 GFEGLDLAWEFPVCWQVNCNRGNPTEKDGFVALVKELSEAFKENG-------LILSAAVSPSKMV 2078

plant   176 DSVSYPIREIKKKLDWVNLIAYDFYSS-STTIGPPAALFDPSNPKGPC--GDYGLKEWIKAGLPA 237
            ....|.:.|:....|||.::.|||:.. ....|..|.||.....:...  |::.:..|::.|:|.
  Fly  2079 IDAGYNVFELSPYFDWVAVMTYDFHGHWDMRTGQIAPLFHRGGDENLYLNGNFSIHYWLERGIPN 2143

plant   238 KKAVLGFPYVGWTWSLG-----SGNDAAT----SRVATSAEGSINYDQIKRLIVDHKARPVFDST 293
            .|.|:|.|..|.|::|.     |.||...    :...|.|:|.:.|.:|...:|:...:.|.|..
  Fly  2144 DKLVMGMPMYGQTFTLADQNRRSLNDKTVGPGKAGTFTRADGFLAYYEICEKVVNDDWKVVRDEE 2208

plant   294 -VVGDYCFAGTSLIGYDDHQSVVAKVKYAKQKGLLGYFSWHVGADDNFGL 342
             :.|.|.::|...|.|||..::..|.::.|...|.|...|.:..||..||
  Fly  2209 GIFGSYAYSGNQWISYDDVTTIRRKSQFIKSLQLGGGMIWALDLDDFRGL 2258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT4G19720NP_001319998.1 GH18_plant_chitinase_class_V 3..343 CDD:119358 102/375 (27%)
Cht10NP_001036422.1 Glyco_18 220..565 CDD:214753
GH18_chitolectin_chitotriosidase 221..586 CDD:119351
ChtBD2 697..737 CDD:214696
CBM_14 801..848 CDD:279884
CBM_14 875..918 CDD:279884
Glyco_18 966..1310 CDD:214753
GH18_chitolectin_chitotriosidase 967..1331 CDD:119351
Glyco_18 1410..1753 CDD:214753
GH18_chitolectin_chitotriosidase 1411..1774 CDD:119351
ChtBD2 1834..1871 CDD:214696
Glyco_18 1909..2253 CDD:214753 96/362 (27%)
GH18_chitolectin_chitotriosidase 1910..2274 CDD:119351 100/368 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 188 1.000 Domainoid score I962
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D826687at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm1002
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11177
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.920

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