DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment AT4G10160 and Rnf130

DIOPT Version :9

Sequence 1:	NP_192754.1	Gene:	AT4G10160 / 826607	AraportID:	AT4G10160	Length:	225	Species:	Arabidopsis thaliana
Sequence 2:	XP_038942740.1	Gene:	Rnf130 / 652955	RGDID:	1562041	Length:	439	Species:	Rattus norvegicus

Alignment Length:	227	Identity:	51/227 - (22%)
Similarity:	98/227 - (43%)	Gaps:	43/227 - (18%)

- Green bases have known domain annotations that are detailed below.

plant     8 TYIPSNSTESQILKFTFIVCVPICVILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNLSTAELG 72
            |.:|..:.....|.|..|..:.:.:|....|:.|.:::...||.            .:.:...||
  Rat   183 TRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYTNA------------RDRNQRRLG 235

plant    73 --LSKDIREMLPIVIYK-ESFTVND-TQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHT 133
              ..|.|.::....:.| :..|..| ..|:||:..|:..:.::.:| |.|.||..|:|.||:.|.
  Rat   236 DAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLP-CKHVFHKSCVDPWLSEHC 299

plant   134 TCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIH---IDDVEEGNRDS 195
            |||:|:|:::         :::.||.::..|:  ..:...:..:.|:|:..   :.|:...:...
  Rat   300 TCPMCKLNIL---------KALGIVPNLPCTD--NVAFDMERLTRTQAVNRRSALGDLANDSSLG 353

plant   196 IEVVKESEENDRNSVGTS----DGCCSCRLGE 223
            :|.::.|        |.|    ||..:.|.||
  Rat   354 LEPLRTS--------GISPLPQDGELTPRTGE 377

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
AT4G10160	NP_192754.1	HRD1	<73..>173	CDD:227568	27/101 (27%)
AT4G10160	NP_192754.1	RING-H2_EL5_like	96..139	CDD:319375	17/42 (40%)
Rnf130	XP_038942740.1	PA_GRAIL_like	40..179	CDD:239037
		HRD1	<197..366	CDD:227568	43/200 (22%)
		RING-H2_RNF130	262..310	CDD:319717	19/57 (33%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	66	1.000	Domainoid score	I4247
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.910