DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT4G10160 and Rnf150

DIOPT Version :10

Sequence 1:NP_192754.1 Gene:AT4G10160 / 826607 AraportID:AT4G10160 Length:225 Species:Arabidopsis thaliana
Sequence 2:NP_001178022.1 Gene:Rnf150 / 364983 RGDID:1304572 Length:437 Species:Rattus norvegicus


Alignment Length:184 Identity:48/184 - (26%)
Similarity:82/184 - (44%) Gaps:32/184 - (17%)


- Green bases have known domain annotations that are detailed below.


plant    15 TESQILKFTFIVCVPICVILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNLSTAELG--LSKDI 77
            |....:..:|||   :.:|.:..||.|.::|....|.            .:.:...||  ..|.|
  Rat   206 TSVVFVSISFIV---LMIISLAWLVFYYIQRFRYANA------------RDRNQRRLGDAAKKAI 255

plant    78 REMLPIVIYK-ESFTVND-TQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRL 140
            .::....|.| :..|.:| ..|:||:..|:..:.::.:| |.|.||..|:|.||..|.|||:|::
  Rat   256 SKLQVRTIRKGDKETESDFDNCAVCIEGYKPSDVVRILP-CRHLFHKSCVDPWLLDHRTCPMCKM 319

plant   141 SL-----IPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSAT---EAIIHID 186
            ::     || |:.|...   ::....|.:.||..:.|....|.|   |:.:.:|
  Rat   320 NILKALGIP-PNADCMD---DLPIDFEGSLGGPPTNQITGASDTTVNESSVTLD 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT4G10160NP_192754.1 HRD1 <73..>173 CDD:227568 31/106 (29%)
RING-H2_EL5-like 96..139 CDD:438124 17/42 (40%)
Rnf150NP_001178022.1 PA_GRAIL_like 45..192 CDD:239037
RING-H2_RNF150 269..323 CDD:438456 20/54 (37%)
Blue background indicates that the domain is not in the aligned region.

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