DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment AT4G09560 and Rnf13

DIOPT Version :9

Sequence 1:	NP_192694.2	Gene:	AT4G09560 / 826540	AraportID:	AT4G09560	Length:	448	Species:	Arabidopsis thaliana
Sequence 2:	NP_001106884.1	Gene:	Rnf13 / 24017	MGIID:	1346341	Length:	381	Species:	Mus musculus

Alignment Length:	378	Identity:	116/378 - (30%)
Similarity:	166/378 - (43%)	Gaps:	66/378 - (17%)

- Green bases have known domain annotations that are detailed below.

plant     8 ILSLLLISHL----VSAKVLLIG-NSTSLSFDDVEATFTPMIKRSDQGGVLYVAEPLDACSDLVN 67
            ||::.|.:.|    |.|.:|... .:.|.:|:|:.|.|...:......|.|..::|.:||..:|.
Mouse    18 ILTVQLFAFLNLLPVEADILAYNFENASQTFEDLPARFGYRLPAEGLKGFLINSKPENACEPIVP 82

plant    68 TVNVKN--GTTVSPPYVLIIRGGCSFEDKIRNAQKAGYKAAIVY--DYEDFGFLVSMAGNPSGVL 128
            .....|  ||.:    |||.|..|:|:.|:.|||:||||||||:  |.:|   |:||..|....|
Mouse    83 PPLKDNSSGTFI----VLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDD---LISMGSNDIDTL 140

plant   129 ----IYGTFVSKATGEVLK-EYAGRTDFEVWLMPSFETSAWSIMAISFISLLAMSAVLATCFFVR 188
                |...|:.:::...|| |:.......:.|:|...... ....|.|:.::.:..:|...|.:.
Mouse   141 KKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPELSLPL-EYYLIPFLIIVGICLILIVIFMIT 204

plant   189 -----RHRVRRRRILALNGNDFHRMPKSMIIRMPTTIFNGICDEATTSILCCICLENYEKGDKLR 248
                 |||.||           :|:.|..:.::|...|.    :.....:|.||||.||.|||||
Mouse   205 KFVQDRHRNRR-----------NRLRKDQLKKLPVHKFK----KGDEYDVCAICLEEYEDGDKLR 254

plant   249 ILPCHHKFHVACVDLWLGQRKSFCPVCKR-----------DARSISTDKPPSEHTPFLSRTPSMT 302
            ||||.|.:|..|||.||.:.|..|||||:           |..|...:...|||||.|..:.|..
Mouse   255 ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENQVSEHTPLLPPSASAR 319

plant   303 PTSSFLLSSSSTTPLQSSHELPISI--------RVDPSLPSTSMQPHTVPMYL 347
            ..|...||.|     .|.|.:..|.        ..|.|.....:..|:|.:.|
Mouse   320 TQSFGSLSES-----HSHHNMTESSDYEDDDNEETDSSDADNEITDHSVVVQL 367

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
AT4G09560	NP_192694.2	PA_C_RZF_like	19..163	CDD:239038	48/153 (31%)
AT4G09560	NP_192694.2	zf-RING_2	234..276	CDD:290367	27/41 (66%)
Rnf13	NP_001106884.1	PA_C_RZF_like	23..180	CDD:239038	51/163 (31%)
		RING-H2_RNF167	238..283	CDD:319711	28/44 (64%)
		RING-H2 finger (C3H2C3-type)	240..281	CDD:319711	26/40 (65%)
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	285..381		21/88 (24%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	72	1.000	Domainoid score	I3995
eggNOG	1	0.900	-	-		E1_KOG4628
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	138	1.000	Inparanoid score	I2184
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1487241at2759
OrthoFinder	1	1.000	-	-		FOG0001489
OrthoInspector	1	1.000	-	-		mtm2018
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X670
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	10	9.830