| Sequence 1: | NP_004178.2 | Gene: | KDM5C / 8242 | HGNCID: | 11114 | Length: | 1560 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | XP_038956408.1 | Gene: | Kdm5c / 317432 | RGDID: | 1560601 | Length: | 1554 | Species: | Rattus norvegicus |
| Alignment Length: | 1560 | Identity: | 1483/1560 - (95%) |
|---|---|---|---|
| Similarity: | 1506/1560 - (96%) | Gaps: | 6/1560 - (0%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1 MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRF 65
Human 66 TPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICK 130
Human 131 DRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSI 195
Human 196 PLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKK 260
Human 261 DKEGPECPPTVVVKEELGGDVKVESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESY 325
Human 326 VCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATR 390
Human 391 EYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPV 455
Human 456 SDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWS 520
Human 521 YSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVR 585
Human 586 TNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICK 650
Human 651 MAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCF 715
Human 716 LSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVA 780
Human 781 LEVEDGRKRSLEELRALESEARERRFPNSELLQQLKNCLSEAEACVSRALGLVSGQEAGPHRVAG 845
Human 846 LQMTLTELRAFLDQMNNLPCAMHQIGDVKGVLEQVEAYQAEAREALASLPSSPGLLQSLLERGRQ 910
Human 911 LGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAVMRGLLVAGASVAPSPAVDKAQAELQE 975
Human 976 LLTIAERWEEKAHLCLEARQKHPPATLEAIIREAENIPVHLPNIQALKEALAKARAWIADVDEIQ 1040
Human 1041 NGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPC 1105
Human 1106 ADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSA 1170
Human 1171 KPSPLASSSTASSTTSICVCGQVLAGAGALQCDLCQDWFHGRCVSVPRLLSSPRPNPTSSPLLAW 1235
Human 1236 WEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQALASED 1300
Human 1301 VTALLGRLAELRQRLQAEPRPEEPPNYPAAPASDPLREGSGKDMPKVQGLLENGDSVTSPEKVAP 1365
Human 1366 EEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPD 1430
Human 1431 LERIRTLLELEKAERHGSRARGRALERRRRRKVDRGGEGDDPAREELEPKRVRSSGPEAEEVQEE 1495
Human 1496 EELEEETGGEGPPAPIPTTGSPSTQENQNGLEPAEGTTSGPSAPFSTLTPRLHLPCPQQPPQQQL 1560
Human 1561 1560 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| KDM5C | NP_004178.2 | JmjN | 13..54 | CDD:128818 | 40/40 (100%) |
| BRIGHT | 80..170 | CDD:128777 | 88/89 (99%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 197..227 | 29/29 (100%) | |||
| PHD1_KDM5C_5D | 326..371 | CDD:277077 | 44/44 (100%) | ||
| JmjC | 501..617 | CDD:202224 | 115/115 (100%) | ||
| zf-C5HC2 | 707..759 | CDD:280996 | 51/51 (100%) | ||
| PLU-1 | 772..1098 | CDD:285609 | 310/325 (95%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1161..1181 | 17/19 (89%) | |||
| PHD2_KDM5C_5D | 1187..1247 | CDD:277081 | 52/59 (88%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1316..1371 | 36/54 (67%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1444..1560 | 93/115 (81%) | |||
| Kdm5c | XP_038956408.1 | JmjN | 13..54 | CDD:128818 | 40/40 (100%) |
| ARID_KDM5C_5D | 79..170 | CDD:350639 | 89/90 (99%) | ||
| PHD1_KDM5C_5D | 326..371 | CDD:277077 | 44/44 (100%) | ||
| JmjC | 501..617 | CDD:396791 | 115/115 (100%) | ||
| zf-C5HC2 | 707..759 | CDD:397190 | 51/51 (100%) | ||
| PLU-1 | 772..1098 | CDD:400641 | 310/325 (95%) | ||
| PHD_SF | 1187..1247 | CDD:419867 | 52/59 (88%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 1 | 1.000 | 774 | 1.000 | Domainoid score | I2870 |
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| HGNC | 1 | 1.500 | - | - | ||
| Hieranoid | 1 | 1.000 | - | - | ||
| Homologene | 1 | 1.000 | - | - | H79498 | |
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| NCBI | 1 | 1.000 | - | - | ||
| OMA | 1 | 1.010 | - | - | QHG53001 | |
| OrthoDB | 1 | 1.010 | - | - | D10110at9347 | |
| OrthoFinder | 1 | 1.000 | - | - | FOG0000761 | |
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 1 | 0.900 | - | - | OOG6_100617 | |
| Panther | 1 | 1.100 | - | - | LDO | PTHR10694 |
| Phylome | 1 | 0.910 | - | - | ||
| SonicParanoid | 1 | 1.000 | - | - | X397 | |
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 13 | 13.430 | |||||