DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT2G46495 and dsc1

DIOPT Version :9

Sequence 1:NP_850456.2 Gene:AT2G46495 / 819259 AraportID:AT2G46495 Length:372 Species:Arabidopsis thaliana
Sequence 2:NP_595266.2 Gene:dsc1 / 2541251 PomBaseID:SPBC947.10 Length:695 Species:Schizosaccharomyces pombe


Alignment Length:60 Identity:18/60 - (30%)
Similarity:26/60 - (43%) Gaps:13/60 - (21%)


- Green bases have known domain annotations that are detailed below.


plant   316 DDIVCPICLSEYASKET----------VR---CIPECDHCFHSECIDVWLKIHGSCPLCR 362
            |..|||||:.......|          ||   .:..|.|.:|.:|:..|::....||:||
pombe   630 DANVCPICMQPIELVSTGSTLNPASMMVRRNYMLTPCHHLYHRQCLLQWMETRSICPVCR 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT2G46495NP_850456.2 GUB_WAK_bind 28..93 CDD:404778
COG5219 <200..364 CDD:227544 18/60 (30%)
RING-H2_EL5_like 319..362 CDD:319375 15/55 (27%)
dsc1NP_595266.2 zf-RING_2 632..689 CDD:290367 15/56 (27%)
zf-rbx1 <633..689 CDD:289448 15/55 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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