DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT2G46495 and RNF44

DIOPT Version :9

Sequence 1:NP_850456.2 Gene:AT2G46495 / 819259 AraportID:AT2G46495 Length:372 Species:Arabidopsis thaliana
Sequence 2:NP_055716.1 Gene:RNF44 / 22838 HGNCID:19180 Length:432 Species:Homo sapiens


Alignment Length:126 Identity:30/126 - (23%)
Similarity:63/126 - (50%) Gaps:28/126 - (22%)


- Green bases have known domain annotations that are detailed below.


plant   268 FASLIQRNVAIAALQPNEVIVTTGLDESI----IESYK-----KTELGESR----------RLPG 313
            :.|.:...:::..:.|..:..|..||..:    :|:|:     ...||:::          :||.
Human   301 YPSFLPYFLSMLPMSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPS 365

plant   314 --------NNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKIHGSCPLCRNSPS 366
                    .::..:|.:|.|::.:::.:|.:| |:|.||::|:|.|||.:.:||:||...|
Human   366 YRFNPDSHQSEQTLCVVCFSDFEARQLLRVLP-CNHEFHTKCVDKWLKANRTCPICRADAS 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT2G46495NP_850456.2 GUB_WAK_bind 28..93 CDD:404778
COG5219 <200..364 CDD:227544 29/122 (24%)
RING-H2_EL5_like 319..362 CDD:319375 16/42 (38%)
RNF44NP_055716.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..86
RING-H2_RNF38_like 377..421 CDD:319386 16/44 (36%)
RING-H2 finger (C3H2C3-type) 380..420 CDD:319386 16/40 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 65 1.000 Domainoid score I4385
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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