DRSC/TRiP Functional Genomics Resources

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Protein Alignment SLIRP and gar2

DIOPT Version :10

Sequence 1:NP_112487.1 Gene:SLIRP / 81892 HGNCID:20495 Length:109 Species:Homo sapiens
Sequence 2:NP_593531.1 Gene:gar2 / 2542869 PomBaseID:SPAC140.02 Length:500 Species:Schizosaccharomyces pombe


Alignment Length:126 Identity:29/126 - (23%)
Similarity:46/126 - (36%) Gaps:30/126 - (23%)


- Green bases have known domain annotations that are detailed below.


Human     2 AASAARGAAAL-RRSIN-----------QPVA------------------FVRRIPWTAASSQLK 36
            ||.||.|...: .|.:|           ||.|                  ||..:.:.|....|.
pombe   319 AAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLS 383

Human    37 EHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPK 97
            ..|...|.::...||.|.::|..:|.|:|.||..:..:..::...|.|.|...::....|:
pombe   384 TAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SLIRPNP_112487.1 RRM_SLIRP 20..92 CDD:409688 19/89 (21%)
gar2NP_593531.1 PRK13808 <2..64 CDD:172341
RRM_SF 264..339 CDD:473069 7/19 (37%)
RRM2_gar2 368..439 CDD:409882 18/70 (26%)
Blue background indicates that the domain is not in the aligned region.

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