Protein Alignment SLIRP and pab2

DIOPT Version :9

• Sequence 1: NP_112487.1
• Gene: SLIRP / 81892
• HGNCID: 20495
• Length: 109
• Species: Homo sapiens
• Sequence 2: NP_595794.1
• Gene: pab2 / 2539733
• PomBaseID: SPBC16E9.12c
• Length: 166
• Species: Schizosaccharomyces pombe
• Alignment Length: 115
• Identity: 32/115 - (27%)
• Similarity: 52/115 - (45%)
• Gaps: 13/115 - (11%)

Human     1 MAASAARGAA----------ALR---RSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPF 52
            |.|.||:..|          |||   .||:....:|..:.::....:|:.|||..|.|.|..:..
pombe    24 MEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILC 88

Human    53 DKETGFHRGLGWVQFSSEEGLRNALQQENHIIDGVKVQVHTRRPKLPQTS 102
            ||.||..:|..:::||....:.|||.....::....::|..:|..:|..|
pombe    89 DKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMS 138

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SLIRP	NP_112487.1	RRM_SLIRP	20..92	CDD:409688	18/71 (25%)
pab2	NP_595794.1	RRM	1..>138	CDD:223796	31/113 (27%)
		bZIP	<8..47	CDD:304365	7/22 (32%)
		RRM_II_PABPs	56..128	CDD:240752	18/71 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910