DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT2G35420 and rnf38

DIOPT Version :9

Sequence 1:NP_181085.2 Gene:AT2G35420 / 818108 AraportID:AT2G35420 Length:254 Species:Arabidopsis thaliana
Sequence 2:XP_021331935.1 Gene:rnf38 / 566820 ZFINID:ZDB-GENE-030131-8693 Length:676 Species:Danio rerio


Alignment Length:142 Identity:33/142 - (23%)
Similarity:63/142 - (44%) Gaps:28/142 - (19%)


- Green bases have known domain annotations that are detailed below.


plant     6 SIDSIPATAVFPSVSMPVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVA 70
            |:..:..|||.|::|:.:.|            ....:..::.|||            ..:.:..|
Zfish   554 SVLPVQPTAVGPAISLELDV------------DDGEVENYEALLN------------LAERLGEA 594

plant    71 TPPENTGLDPFIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWF 135
            .|   .||....|...|.:.::.:..::..|.|.:|:.:|.....:|::. |.|.||:.|:|.|.
Zfish   595 KP---RGLTKADIEQLPSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWL 655

plant   136 ELHKTCPVCRCE 147
            :.::|||:||.:
Zfish   656 KANRTCPICRAD 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT2G35420NP_181085.2 zf-RING_2 102..145 CDD:290367 14/42 (33%)
rnf38XP_021331935.1 RING-H2_RNF38_like 621..665 CDD:319386 15/44 (34%)
RING-H2 finger (C3H2C3-type) 624..664 CDD:319386 14/40 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X146
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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