Protein Alignment AT2G35420 and hrd1

DIOPT Version :9

• Sequence 1: NP_181085.2
• Gene: AT2G35420 / 818108
• AraportID: AT2G35420
• Length: 254
• Species: Arabidopsis thaliana
• Sequence 2: NP_596376.1
• Gene: hrd1 / 2539900
• PomBaseID: SPBC17D11.02c
• Length: 677
• Species: Schizosaccharomyces pombe
• Alignment Length: 232
• Identity: 48/232 - (20%)
• Similarity: 80/232 - (34%)
• Gaps: 62/232 - (26%)

plant    16 FPSVSMPVTVVLTGVLLFVIFAGFFSLFL-----WQFL-----LNRLFTTWNLQRTPYGD----- 65
            ||.||:|:..:..      ::..|:|||.     .:|.     :|.::.|...::....|
pombe   236 FPYVSVPIYSIRQ------MYTCFYSLFRRIREHARFRQATRDMNAMYPTATEEQLTNSDRTCTI 294

plant    66 ----LIHVATPPENTG-LDPFIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHP 125
                :.|...|||||. ::|                          |....|....||  .|.|.
pombe   295 CREEMFHPDHPPENTDEMEP--------------------------LPRGLDMTPKRL--PCGHI 331

plant   126 FHSNCIDLWFELHKTCPVCRCELDPGMIGSGRLESFHNTVTITIQDINHDEENPPTA-------- 182
            .|.:|:..|.|..:|||:||..:.........:.:..|.....|.....:.:|.||.
pombe   332 LHFHCLRNWLERQQTCPICRRSVIGNQSSPTGIPASPNVRATQIATQVPNPQNTPTTTAVPGITN 396

plant   183 GSSKRLIEASAWRFSRSHSTGHFMVKTTDANVKSKRR 219
            .|::...:||.:....:.::..|...|.|.:....||
pombe   397 SSNQGDPQASTFNGVPNANSSGFAAHTQDLSSVIPRR 433

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
AT2G35420	NP_181085.2	zf-RING_2	102..145	CDD:290367	13/42 (31%)
hrd1	NP_596376.1	HRD1	1..514	CDD:227568	48/232 (21%)
		zf-RING_2	291..351	CDD:290367	20/87 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910