DRSC/TRiP Functional Genomics Resources

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Protein Alignment AT2G20650 and RNF38

DIOPT Version :9

Sequence 1:NP_179657.2 Gene:AT2G20650 / 816593 AraportID:AT2G20650 Length:559 Species:Arabidopsis thaliana
Sequence 2:NP_073618.3 Gene:RNF38 / 152006 HGNCID:18052 Length:515 Species:Homo sapiens


Alignment Length:146 Identity:42/146 - (28%)
Similarity:57/146 - (39%) Gaps:37/146 - (25%)


- Green bases have known domain annotations that are detailed below.


plant   421 PLHPY---YILGMTVTRLAI-PLYVFGCPKNFMRVEPSKAWCVSLCAFMGFQAGVLLLQHYFGSR 481
            |.||.   |:|.|.....|: |.:.|........||..:|              :|.|....|..
Human   383 PYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEA--------------LLNLAERLGEA 433

plant   482 CFVPRKL-------LPEKYSYYRRLDHNVNRSRD--CVICMTTIDLRHRINDCMVTPCEHIFHSG 537
              .||.|       ||   ||  |.:.|.::|..  ||:||...:.|..:.   |.||.|.||:.
Human   434 --KPRGLTKADIEQLP---SY--RFNPNNHQSEQTLCVVCMCDFESRQLLR---VLPCNHEFHAK 488

plant   538 CLQRWMDIKMECPTCR 553
            |:.:|:.....||.||
Human   489 CVDKWLKANRTCPICR 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AT2G20650NP_179657.2 DUF2921 <405..483 CDD:402626 15/65 (23%)
COG5540 <508..558 CDD:227827 17/48 (35%)
RNF38NP_073618.3 Bipartite nuclear localization signal 1 57..71
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 73..141
Bipartite nuclear localization signal 2 115..131
RING-H2_RNF38_like 460..504 CDD:319386 15/46 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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