| Sequence 1: | NP_004634.1 | Gene: | PABPN1 / 8106 | HGNCID: | 8565 | Length: | 306 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_476806.2 | Gene: | Hrb87F / 48535 | FlyBaseID: | FBgn0004237 | Length: | 385 | Species: | Drosophila melanogaster |
| Alignment Length: | 131 | Identity: | 38/131 - (29%) |
|---|---|---|---|
| Similarity: | 57/131 - (43%) | Gaps: | 19/131 - (14%) |
- Green bases have known domain annotations that are detailed below.
|
Human 138 ELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVT 202
Human 203 ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI---KVIPKR-TNRPGISTTDRGFPR 263
Human 264 A 264 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| PABPN1 | NP_004634.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..115 | ||
| Interaction with SKIP. /evidence=ECO:0000269|PubMed:11371506 | 2..145 | 2/6 (33%) | |||
| GCG-encoded polyalanine repeat | 2..7 | ||||
| Stimulates PAPOLA. /evidence=ECO:0000250 | 119..147 | 2/8 (25%) | |||
| Necessary for homooligomerization | 155..306 | 33/114 (29%) | |||
| RRM_II_PABPN1 | 173..248 | CDD:409966 | 21/77 (27%) | ||
| Interaction with PAPOLA. /evidence=ECO:0000250 | 286..306 | ||||
| Hrb87F | NP_476806.2 | RRM1_hnRNPA_like | 25..102 | CDD:409992 | 2/6 (33%) |
| RRM_SF | 116..188 | CDD:473069 | 19/71 (27%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||