Sequence 1: | NP_004634.1 | Gene: | PABPN1 / 8106 | HGNCID: | 8565 | Length: | 306 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_649903.1 | Gene: | RnpS1 / 41147 | FlyBaseID: | FBgn0037707 | Length: | 374 | Species: | Drosophila melanogaster |
Alignment Length: | 301 | Identity: | 64/301 - (21%) |
---|---|---|---|
Similarity: | 111/301 - (36%) | Gaps: | 59/301 - (19%) |
- Green bases have known domain annotations that are detailed below.
Human 5 AAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPE 69
Human 70 PEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAE 134
Human 135 KLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARS-------IYVGNVDYGATAEELEAHF 192
Human 193 HGCGSVNRVTILCDKFSGHP---KGFAYIEFSDKESVRTSLA-LDESLFRGRQIKVIP----KRT 249
Human 250 NRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRG 290 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
PABPN1 | NP_004634.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..115 | 20/109 (18%) | |
Interaction with SKIP. /evidence=ECO:0000269|PubMed:11371506 | 2..145 | 25/139 (18%) | |||
GCG-encoded polyalanine repeat | 2..7 | 0/1 (0%) | |||
RRM | 113..>289 | CDD:223796 | 44/190 (23%) | ||
Stimulates PAPOLA. /evidence=ECO:0000250 | 119..147 | 4/27 (15%) | |||
Necessary for homooligomerization | 155..306 | 36/151 (24%) | |||
RRM_II_PABPN1 | 173..248 | CDD:409966 | 22/89 (25%) | ||
Interaction with PAPOLA. /evidence=ECO:0000250 | 286..306 | 2/5 (40%) | |||
RnpS1 | NP_649903.1 | RRM | <196..>301 | CDD:223796 | 27/114 (24%) |
RRM_RNPS1 | 221..294 | CDD:240811 | 19/74 (26%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG4209 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |