DRSC/TRiP Functional Genomics Resources

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Protein Alignment PABPN1 and CG12288

DIOPT Version :10

Sequence 1:NP_004634.1 Gene:PABPN1 / 8106 HGNCID:8565 Length:306 Species:Homo sapiens
Sequence 2:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster


Alignment Length:293 Identity:61/293 - (20%)
Similarity:115/293 - (39%) Gaps:58/293 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    51 ESEELEPEELLLEPEPEPEPEEEPPR----PRAPPGAPGPGP----GSGAPGSQEEEEEPGLVE- 106
            :..:|.|:|:..|||.:.:.|.:..:    .:.|..||...|    ...|..:...::|.|:.. 
  Fly    83 QQNKLAPKEIKTEPEAQVKVESKATKKEKVEKEPTTAPNEKPKGKVSKKAKANANNKDEEGVKRI 147

Human   107 GDPGDGA---------IEDPELEAIK----------ARVR------------------------- 127
            .:|.:.|         |....::.:|          .|:|                         
  Fly   148 RNPAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQRKVAGSLNAYVVL 212

Human   128 EMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEAD---ARSIYVGNVDYGATAEELE 189
            |..|.|::...|.....|:.::...|.:........::|..:|   .|:|:||::.|.||.|:|.
  Fly   213 EKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDKQPSDKDAKRTIFVGSLKYSATEEQLR 277

Human   190 AHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGI 254
            ..|..||.::.:..|.|...| .||.||:.|...::|..:|.|:::|...|.|.|...:..:.|.
  Fly   278 EIFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVKKLGA 341

Human   255 STTDRGFPRARYRARTTNYNSSRSRFYSGFNSR 287
            ... |....|...::|::...::::..:|...|
  Fly   342 KQV-RDAAAASAASKTSSKTKAKNQNSAGAKKR 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PABPN1NP_004634.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..115 16/81 (20%)
Interaction with SKIP. /evidence=ECO:0000269|PubMed:11371506 2..145 24/146 (16%)
GCG-encoded polyalanine repeat 2..7
Stimulates PAPOLA. /evidence=ECO:0000250 119..147 8/62 (13%)
Necessary for homooligomerization 155..306 35/136 (26%)
RRM_II_PABPN1 173..248 CDD:409966 26/74 (35%)
Interaction with PAPOLA. /evidence=ECO:0000250 286..306 1/2 (50%)
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828 9/80 (11%)
RRM_SF 261..332 CDD:473069 25/71 (35%)
Blue background indicates that the domain is not in the aligned region.

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