DRSC/TRiP Functional Genomics Resources

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Protein Alignment PABPN1 and Caper

DIOPT Version :10

Sequence 1:NP_004634.1 Gene:PABPN1 / 8106 HGNCID:8565 Length:306 Species:Homo sapiens
Sequence 2:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster


Alignment Length:303 Identity:74/303 - (24%)
Similarity:110/303 - (36%) Gaps:80/303 - (26%)


- Green bases have known domain annotations that are detailed below.


Human     8 AAAAGAAGGR---GSGPGRRRHLVPGAGGE----AGEGAPGGAG--------------------- 44
            :|.:|.:|||   ||.||       |.||.    |..|...|:|                     
  Fly    21 SAGSGGSGGRKRSGSSPG-------GGGGHDDDYAENGPRNGSGGGSSHKKQSKRSRSRSGSRDG 78

Human    45 ----DYGNGLESEELEPEELLL---------------EPEPEPEPEEEPPRPRAPPGAPGPGPGS 90
                |.||...|...:.:|...               :.:.|.|.|.|..|.|........| |.
  Fly    79 KSRRDRGNERSSHRDKDKERDRNRDGGDRDRHRREGGDRDRERERERERDRSRRSRSRDERG-GG 142

Human    91 GAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKEL------------QNEV 143
            |..|.::::.......|  |..:::.......:.|.|..:::.::|..:            :|..
  Fly   143 GRYGDRDKDRRSRDRRG--GSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNSR 205

Human   144 EKQMN----MSPPPG--NAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVT 202
            .:..|    .|||.|  ...|..:|.||:   |||:::...:.....|.:||..|...|.|..|.
  Fly   206 RRGTNSPRRRSPPNGADRTTPTELSPEER---DARTVFCIQLSQRVRARDLEEFFSSVGKVRDVR 267

Human   203 IL-CDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 244
            :: |:| :...||.|||||.|.|||..:|.|......|..|.|
  Fly   268 LITCNK-TKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMV 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PABPN1NP_004634.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..115 33/153 (22%)
Interaction with SKIP. /evidence=ECO:0000269|PubMed:11371506 2..145 37/195 (19%)
GCG-encoded polyalanine repeat 2..7
Stimulates PAPOLA. /evidence=ECO:0000250 119..147 4/39 (10%)
Necessary for homooligomerization 155..306 32/91 (35%)
RRM_II_PABPN1 173..248 CDD:409966 25/73 (34%)
Interaction with PAPOLA. /evidence=ECO:0000250 286..306
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 36/101 (36%)
Blue background indicates that the domain is not in the aligned region.

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