DRSC/TRiP Functional Genomics Resources

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Protein Alignment PABPN1 and Pabpn1

DIOPT Version :10

Sequence 1:NP_004634.1 Gene:PABPN1 / 8106 HGNCID:8565 Length:306 Species:Homo sapiens
Sequence 2:XP_063129984.1 Gene:Pabpn1 / 116697 RGDID:619928 Length:320 Species:Rattus norvegicus


Alignment Length:322 Identity:285/322 - (88%)
Similarity:287/322 - (89%) Gaps:32/322 - (9%)


- Green bases have known domain annotations that are detailed below.


Human     1 MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPE 65
            ||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.|||    
  Rat     1 MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGDPGGAGDYGNGLESEELEPGELL---- 61

Human    66 PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREME 130
            |||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
  Rat    62 PEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVETDPGDGAIEDPELEAIKARVREME 126

Human   131 EEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGC 195
            ||||||||||||||||||||||||||||||||:||||||||||||||||||||||||||||||||
  Rat   127 EEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGC 191

Human   196 GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIK----------------- 243
            ||||||||||||||||||||||||||||||||||||||||||||||||                 
  Rat   192 GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVSLGPWLLSILYRFSSL 256

Human   244 -----------VIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYR 294
                       ||||||||||||||||||||||||||||||||||||||||||||||||:||
  Rat   257 TPRLSVLCPFQVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRIYR 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PABPN1NP_004634.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..115 106/113 (94%)
Interaction with SKIP. /evidence=ECO:0000269|PubMed:11371506 2..145 135/142 (95%)
GCG-encoded polyalanine repeat 2..7 4/4 (100%)
Stimulates PAPOLA. /evidence=ECO:0000250 119..147 27/27 (100%)
Necessary for homooligomerization 155..306 138/168 (82%)
RRM_II_PABPN1 173..248 CDD:409966 74/102 (73%)
Interaction with PAPOLA. /evidence=ECO:0000250 286..306 8/9 (89%)
Pabpn1XP_063129984.1 None

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