Protein Alignment PABPC1L and Pabpc1l

DIOPT Version :9

• Sequence 1: NP_001359108.1
• Gene: PABPC1L / 80336
• HGNCID: 15797
• Length: 619
• Species: Homo sapiens
• Sequence 2: XP_038962521.1
• Gene: Pabpc1l / 296351
• RGDID: 1563142
• Length: 669
• Species: Rattus norvegicus
• Alignment Length: 677
• Identity: 479/677 - (70%)
• Similarity: 522/677 - (77%)
• Gaps: 70/677 - (10%)

Human     1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADA 65
            |:..|.|..|:||||||||||||||||||.|||.|.|||||||||||||||||||||||||||||
  Rat     1 MDTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADA 65

Human    66 ERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
            |||||||||||:||||||||||.||||||:||:|||||||||:|||||||||||||||:|||.||
  Rat    66 ERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130

Human   131 ACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYV 195
            ..:|||||||||||||||||||:|||||||||||||||||||||||::||||||||||.||||||
  Rat   131 VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYV 195

Human   196 KNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRL 260
            |||.||:||||||||||||||..|||||||::|.||.|||:||||||||||||.|||||||||:|
  Rat   196 KNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQL 260

Human   261 LYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKV 325
            ||.||||||.|||||||||||||||:|..||||||||||||||||:||:|::.||.|||||||||
  Rat   261 LYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKV 325

Human   326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMR 390
            |||..||||||||||||||||||||||||||||||||||||||||||||||||||||.:|
  Rat   326 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR----- 385

Human   391 TLSNPLLGSFQQPSSYFLPAM-------------------------------------------- 411
             ||..:|.|||||:||.|||:
  Rat   386 -LSRSVLSSFQQPTSYLLPAVHQVTGCLQLRLREQNVTDRGSVEMTLDKLLQSLKASFDLSLEGP 449

Human   412 ----------------PQPPAQAAYYGCGPVTPTQPAPRWTSQPPRPSSAYPPGASMVRPPVVPR 460
                            ||...|..||....:.|.||.||||:||..|||..||.||:|:|.....
  Rat   450 TCFLVFLELLTSDPLPPQSTTQTMYYSSASIAPMQPDPRWTAQPHGPSSTCPPAASVVQPLSTAP 514

Human   461 RPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCCTPGRPLLPCKCSSAAHSTYRVQE 525
            .|..|:||..|||:|    |||||||.|||||||||.|.|.|.||:|||..:.|||.||.:.|||
  Rat   515 HPCIHLSSASQASSQ----VPHTQRVVNIGTQTTGPGGEGSCIPGQPLLAHRGSSAVHSAHGVQE 575

Human   526 PAVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLES 590
            ..|::||.:|||.|||.||||||||||||||||.||||....|.|||||||||:||.||||:|||
  Rat   576 STVYVPGHQPLTVSMLDAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLES 640

Human   591 PESLHAKIDEAVAVLQAHQAMEQPKAY 617
            ||||||||:||||||:||:|||...:|
  Rat   641 PESLHAKIEEAVAVLKAHRAMESADSY 667

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC1L	NP_001359108.1	PABP-1234	11..606	CDD:130689	468/654 (72%)
Pabpc1l	XP_038962521.1	PABP-1234	11..656	CDD:130689	468/654 (72%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C83684854
Domainoid	1	1.000	181	1.000	Domainoid score	I26919
eggNOG	0	0.000	Not matched by this tool.
HGNC	1	1.500	-	-
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H77989
Inparanoid	1	1.050	926	1.000	Inparanoid score	I6107
NCBI	1	1.000	-	-
OMA	1	1.010	-	-		QHG53624
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	1	1.000	-	-		FOG0000294
OrthoInspector	1	1.000	-	-		oto143501
orthoMCL	1	0.900	-	-		OOG6_100425
Panther	1	1.100	-	-	LDO	PTHR24012
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X269
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	16	16.410