DRSC/TRiP Functional Genomics Resources

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Protein Alignment RAB11FIP1 and rab11fip1a

DIOPT Version :9

Sequence 1:NP_001002814.2 Gene:RAB11FIP1 / 80223 HGNCID:30265 Length:1283 Species:Homo sapiens
Sequence 2:XP_003199162.3 Gene:rab11fip1a / 553374 ZFINID:ZDB-GENE-051113-116 Length:1187 Species:Danio rerio


Alignment Length:1397 Identity:420/1397 - (30%)
Similarity:610/1397 - (43%) Gaps:365/1397 - (26%)


- Green bases have known domain annotations that are detailed below.


Human    15 WSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEKYATSVSERSLGAPVWREEATFELPSLLS 79
            |.||.||||||:||.||.||..||:||||::||||:|::|||:|:.: :|.|:|||||:|| |:.
Zfish     8 WYPTSVQVTVLKARNLRIKGKNGTNDAYAIMQVGKDKFSTSVAEKCV-SPEWKEEATFDLP-LVH 70

Human    80 SGPAAAATLQLTVLHRALLGLDKFLGRAEVDLRDLHRDQGRRKTQWYKLKSKPGKKDKERGEIEV 144
            .|.....||.:..:||||:|||||||:|.::|.|||.::.|:||.||||..|.||::|:|||:.:
Zfish    71 QGDVERCTLYIIAMHRALVGLDKFLGQAVINLVDLHANRSRKKTDWYKLVDKHGKQEKDRGEVML 135

Human   145 DIQFMRNNMTASMFDLSMKDKSRNPFGKLKDKIKGKNKDSGSDTASAIIPSTTPSVDSDDESVVK 209
            ||||||||||||||||||.:|.|:...||||||:||.||..||:||||:||   |:::|.|...:
Zfish   136 DIQFMRNNMTASMFDLSMTEKPRSGIAKLKDKIRGKKKDGLSDSASAIVPS---SMETDSEGEGE 197

Human   210 ----DKKKKSKIKTLLS-KSNLQKTPLSQSMSVLPTSKPEKVLLRPGDFQSQWDEDDNEDESSSA 269
                ..|||||:|:|.. |:|||:. :|||||.|.| .|||                |...|||.
Zfish   198 GSSDSPKKKSKLKSLFGPKTNLQRN-VSQSMSTLGT-LPEK----------------NSSLSSSR 244

Human   270 SD--------------VMSHKRTASTDLKQLNQVNFTLPKKEGLSFLGGLRSKNDVLSRSNVCIN 320
            |.              ::.||||.|:|.| ::...|:|     ||     |||.::..::|:|||
Zfish   245 SSGLNVDSPDVKKKFKILGHKRTDSSDSK-VSLGPFSL-----LS-----RSKQNIQEQNNLCIN 298

Human   321 GNHVYLEQPEAKGEIKDSSPSSSPSPKGFRKKHLFSSTENLAAGSWKEPAEGGGLSSDRQLSESS 385
            |:|||.|         |..|.:|           |.||.:|.: |.|..||.......|.:|:.|
Zfish   299 GSHVYAE---------DQEPKAS-----------FGSTLSLNS-SGKGSAEDVRKFHQRNISDVS 342

Human   386 TKDSLKSMTLPSYRPAPLVSGDLRENMAP------ANSEATK--EAKESKKPESRRSSLLSLMTG 442
            . ||.|.:::|||:|      ::::...|      .||:..|  |.::.||||.|  ||..::..
Zfish   343 I-DSFKGLSIPSYKP------EVQDKTVPQRPLEDKNSQPVKVLEEEKEKKPEGR--SLQEMLDR 398

Human   443 KKD---------VAKGSEGENPLTVPGREKEGMLMGVKPGEDASGPAEDLVRRSEKDTAAVVS-- 496
            :::         ..|..|.........||:|.:..  |..|:.:..||:...:.|......:|  
Zfish   399 QEEQEQWRQQERERKQEEERKEQERKRREEEELQR--KRREEETQHAEEQRHQEESRVTERLSSL 461

Human   497 ----------RQG---------------SSLNLFEDVQITEPEAE---PESKS----------EP 523
                      ::|               ||.|.|||:.:| |:..   ||.:|          .|
Zfish   462 FGIGKKKEEKKEGSGSPAMNEPKHLNVSSSTNPFEDIPLT-PDTSASLPEERSTDPRRGIRGIAP 525

Human   524 RPPISS--PRAPQTRAVKPR--LEVSPEAQPTARLPSPTDSPSSLPPLPSSSGQASVPSELGHGA 584
            .||.|:  .|..:..|||||  |.|.||..     .|.:.|||:.....|:...:.|.|.|    
Zfish   526 TPPASAFPSRTAKVSAVKPRLALNVLPETH-----NSLSQSPSNFVNKQSTIHASPVSSSL---- 581

Human   585 DTQSSESPSVFSSLSSPIA---APISTSTPIESWPLVDRGQAKSEGPPLLPKAELQTESLTPVPN 646
            .|...||..:||.|.|.:|   .|.|.|..|||  .::...|        ||:|.:...|.|...
Zfish   582 STDPFESLGMFSDLHSSLAPPKPPRSFSESIES--NMENLSA--------PKSEKRQAPLPPGYI 636

Human   647 SGSSALGSLFKQPSFPANKGTEDSLMGRTRETGTEKNTSSLELEESLPEQPETGRQEEELPRFPC 711
            .|||:           |..|.:||           |||....|  .||:. ||        .||.
Zfish   637 GGSSS-----------ARNGRQDS-----------KNTQRPPL--PLPDY-ET--------LFPK 668

Human   712 KKQ--------DYSPSSGEAQEVPFALSLSSDGAVSPVGELAAGGDRDLESQAGSLVESKARDAA 768
            |:.        |:..:....:...|:..::.||.           ::.|.:.:..|   |.|.:|
Zfish   669 KRHGVMSQTRWDHIIAEVNQRNWDFSEEMNVDGP-----------NKSLSNSSAVL---KDRTSA 719

Human   769 --------EEVAPPL---PMGASVPSIDSMMRKLEEMGLNLRKDQKKTKKRVSFSEQLFTEEAVA 822
                    .|..||:   |..|..|.      |:.|..   ....|.|.:..:|:|.::......
Zfish   720 NLNQLQRNHEPLPPVLTRPKEALKPP------KVHETS---EPTLKTTVQHDNFNESVYATVNKP 775

Human   823 GAALLVEGH-----SSCPQELNPAWSVAGNASDGEPPESPHAEDSERESVTTPGPATCGAPASPA 882
            |.:...|.:     ...||::.      ....||...:..|:.|..             .|||..
Zfish   776 GKSKNFENNPHPAVQHLPQDME------RKTPDGITYQPSHSIDKP-------------TPASRV 821

Human   883 DHLLLPSQEESFSEVPMS---EASSAKDTPLFRMEGEDALVTQ--------------------YQ 924
            ...:.|..|:...::|.:   :.|..|| |:.::|.:..:.||                    :.
Zfish   822 KQNINPKTEDVAKQMPSAKPRQQSLVKD-PVRQVEPDQHVTTQPVTSENNKAEKSEKGQKGSVFT 885

Human   925 SKASDHEGLLSDPLSDLQLVSDFKSPIMADLNLSLPSIPEVASDDERI---DQVEDDGDQVEDDG 986
            ||:......:.:.|..|.     |.|..:.:..:.|. ..|.::|...   .|..|:.|.:...|
Zfish   886 SKSHLRTSEVPENLGKLS-----KDPDGSGMINTFPG-DNVGTEDPWAFIPQQTTDEEDVLFTKG 944

Human   987 ETAKSSTLDIGALSLGLVVPCPERGKGPSGEADRLVLGEGLCDFRLQAPQASVTAPSEQTTEFGI 1051
            .|...|..| ..||....:...:....|..|:::            |||..:..|.:.....|.:
Zfish   945 PTQLKSIED-QELSYNKNLAKKDNSMAPKSESEK------------QAPSFTEQARATFQRNFSL 996

Human  1052 HKPHLGKSSSLDKQLPGPSGGEEEKPMGNGSPSPPPGTSLDNPV--PSPSPSEIFPVTHSFPSSA 1114
            .|    |:.|.....||.:|.|              .:|||..:  .|....::.....|..||:
Zfish   997 RK----KNPSHLYTTPGKAGTE--------------SSSLDRSISQSSQDAEDVEMTVTSIASSS 1043

Human  1115 HSDTHHTSTAESQKKATAEGSAGRVENFGKRKPLLQAWVSPSETHPVSAQPGAGTG-SAKHRLHP 1178
            .::    ||.|:.:..|.            .|..|:|||||||:...:.|.|:|.. |:..|.||
Zfish  1044 RTE----STPETSQTPTG------------GKTALRAWVSPSESQTYTLQSGSGNAVSSSKRPHP 1092

Human  1179 VKPMNAMATKVAN-CSLG----TATIISENLNNEVMMKKYSPSDPAFAYAQLTHDELIQLVLKQK 1238
            ||||:....:..: .::|    |.||      .|:...|.....|   |.|||.:|||.||:||:
Zfish  1093 VKPMSTTENQSPSVLAVGKEPKTITI------KEMAKSKNCEGSP---YTQLTQEELITLVVKQQ 1148

Human  1239 ETISKKEFQVRELEDYIDNLLVRVMEETPNIL 1270
            ..:|.|:.::.|||:||||||:||:||.|.||
Zfish  1149 GELSSKDSRILELEEYIDNLLLRVIEEKPEIL 1180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAB11FIP1NP_001002814.2 C2_Rab11-FIP_classI 20..147 CDD:176064 71/126 (56%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..281 55/138 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 330..727 117/468 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 741..782 10/51 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 835..913 16/80 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 969..993 6/26 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1037..1141 20/105 (19%)
Necessary for interaction with RAB4A and RAB11A, subcellular location and endosomal recycling 1219..1283 29/52 (56%)
RBD-FIP 1226..1273 CDD:255374 26/45 (58%)
rab11fip1aXP_003199162.3 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 131 1.000 Domainoid score I20524
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D259412at33208
OrthoFinder 1 1.000 - - FOG0002878
OrthoInspector 1 1.000 - - oto49036
orthoMCL 1 0.900 - - OOG6_114278
Panther 1 1.100 - - LDO PTHR15746
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X973
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 1 1.500 - -
1010.420

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