DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GLRA3 and SecCl

DIOPT Version :9

Sequence 1:NP_006520.2 Gene:GLRA3 / 8001 HGNCID:4328 Length:464 Species:Homo sapiens
Sequence 2:NP_001261986.1 Gene:SecCl / 39949 FlyBaseID:FBgn0036727 Length:509 Species:Drosophila melanogaster


Alignment Length:514 Identity:137/514 - (26%)
Similarity:227/514 - (44%) Gaps:89/514 - (17%)


- Green bases have known domain annotations that are detailed below.


Human    16 FWEAALLLSLVATKETDSARSRSAP-------MSPSDFLDKLMGRTSGYDARIRP-----NFKGP 68
            ||...:|:..:.|.....|.....|       :..:..:.:|. ....||...||     :.|..
  Fly    10 FWITLILVLSIWTSVGVKAEEEECPSMADAGSLQQTQLIQRLT-HVCRYDRLERPFEYDSDGKRL 73

Human    69 PVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEY-PDDSLDLDPSMLDSIWKPDLF 132
            |:.|...|::....::....:.::::..|:.::.|.||||..: ..|::.....:.:.:|.|.:|
  Fly    74 PIVVKTRIYVYFLQNLNSDLLQFKMHALLQLRFQDKRLAYKAFNRSDNILGQKHLSERLWLPHIF 138

Human   133 FANEKGANFHEVTTDNK--LLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYT 195
            ||||:.::.  :.||.|  |..:...|||:.|.|:..:|.|.|:.:.||.|.|.|...|||:.|.
  Fly   139 FANERESSI--LGTDEKDVLTSLSPEGNVIISTRMQASLYCWMNFQKFPFDQQFCSTVLESWMYN 201

Human   196 MNDLIFEWQDEAPVQVAEGLTLPQF----------LLKEEKD-LRYCTKHYNTGKFTCIEVRFHL 249
            .:|||.||:...|:.....:.|.::          :::.:.| ||:..   ..|.::.:....:|
  Fly   202 TSDLILEWEPHTPISFDPEMRLTEYNMAQFWHNTTIVQSDGDNLRHGA---FAGNYSSLSFTVNL 263

Human   250 ERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVK 314
            :|::|:||:..|:||::||.:||||||:..||:|.|:.||.:|:|:..|.||....:||||||:|
  Fly   264 KREIGFYLLDYYLPSMMIVAISWVSFWLQADASPPRIMLGTSTMLSFITLSSSQSKNLPKVSYIK 328

Human   315 AIDIWMAVCLLFVFSALLEYAAVNFVSRQH--------------KELLRFRRKRK-------NKT 358
            ..::|...|..|:|.:|:|:|.||.:.|:.              |..|..|..|:       |::
  Fly   329 VSEVWFLGCTFFIFGSLVEFAFVNTIWRRKENIELKKVNSKYIIKSTLTPRPARRQIGGSLSNES 393

Human   359 EAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKGPNHP-----------VQVMPK 412
            .|.:...........:.||.        |.|...|..:......||.|           |.:...
  Fly   394 RARSCSSLDNIVSSTESVRN--------GNGTVNQGFNNYLTVHPNLPIIRTECAEADTVSICSA 450

Human   413 SPDEMRKVFIDRAKK-----------------IDTISRACFPLAFLIFNIFYWVIYKIL 454
            ..:....|.:|:.||                 ||..||..||..||.||..||....:|
  Fly   451 RTNNDHIVDVDKDKKDTPPTFTTMTPQEIAMWIDRRSRFLFPAMFLAFNALYWTFVYVL 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GLRA3NP_006520.2 LIC 12..451 CDD:273305 136/509 (27%)
Strychnine-binding. /evidence=ECO:0000269|PubMed:26416729 235..240 1/4 (25%)
SecClNP_001261986.1 LIC 43..505 CDD:273305 130/475 (27%)
Neur_chan_LBD 44..267 CDD:280998 57/228 (25%)
Neur_chan_memb 275..503 CDD:280999 68/235 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.910

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