DRSC/TRiP Functional Genomics Resources

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Protein Alignment CLMN and Msp300

DIOPT Version :9

Sequence 1:XP_011535460.1 Gene:CLMN / 79789 HGNCID:19972 Length:1033 Species:Homo sapiens
Sequence 2:NP_001188695.1 Gene:Msp300 / 3771968 FlyBaseID:FBgn0261836 Length:13540 Species:Drosophila melanogaster


Alignment Length:987 Identity:183/987 - (18%)
Similarity:326/987 - (33%) Gaps:323/987 - (32%)


- Green bases have known domain annotations that are detailed below.


Human   163 TDSDSSFPPTPTAERS-----------VAISVKDQRKAIKALLAWV------------------- 197
            :|.:....|.|..|.:           |.:||.|..|:|..:....                   
  Fly  4771 SDDEEEPVPEPVKEETLVKEVVEEKPIVEVSVVDDSKSITTVTTTTTTTETISELPIPEEPKKVV 4835

Human   198 --------QRKTRKYGVAVQDFAGSWRSGL-------------------------AFLAVIKAID 229
                    .:|....|:.|.|.:.||...|                         ..:.:...::
  Fly  4836 EPEKKPEEPKKPAYAGLPVDDSSNSWMDVLDEPMNFSDDEEEPIPEPLKEETVVEEVVEIKPIVE 4900

Human   230 PSLVDMKQALENSTRENLE----KAFSIAQDALHIPRLLEPEDIMVDTPDEQSIMTYVAQFLERF 290
            .|:||..:.:...|...:.    ....|:::.   .:::|||    ..|:|.....|..      
  Fly  4901 VSVVDDSKTITTVTTTTITTETISELPISEEP---KKVVEPE----KKPEEPKKPAYAG------ 4952

Human   291 PELEAEDI-------------FDSDKEVPI-----ESTFVR--IKETPSEQ-----ESK-VFVLT 329
              |..:|.             |..|:|.|:     |.|.|.  ::|.|..:     :|| :..:|
  Fly  4953 --LPVDDSTNSWMDVLDEPMNFSDDEEEPVPEPVKEETLVEEVVEEKPIVEVSVVDDSKTITTVT 5015

Human   330 ENGERTYTVNHET-SHPPPSKVFVCDKPESMKEFRLDGVSSH--ALSDSSTEFMHQIIDQV---- 387
            .....|.|::... |..|...|....|||...|.....:||:  .|..|..:.:...:|.:    
  Fly  5016 TTTTTTETISEPVISEQPKKTVEPVKKPEESTEVEPKPLSSNIWELHSSYADVLRHTVDFISLEK 5080

Human   388 ------LQGGPGKTSDISEPS--PESSILSS-------RKENGRSNSLPIKKTVHFEADTYKDPF 437
                  .:...||...:.||:  ||..|.:.       :||.|.....|..:.:..|.::.||..
  Fly  5081 NNVEVPTESNLGKVPTVKEPAKLPEPLIKTKAKKEKPLKKEKGAKLLTPKDEVLPIERESAKDET 5145

Human   438 ---------------CSKNL---------SLCFEGSPR-VAK--ESLRQDGHVL------AVEVA 469
                           ...|:         |:..:|:.. :.|  :|...||.||      :.|:.
  Fly  5146 KTSWSTMVENDFDDNVQTNILSADSTLWSSIVRQGAQEPITKMTQSADHDGKVLEPAFQNSQEIN 5210

Human   470 EEKEQKQESSKIPESSSDKVAGDIFLVEGTNNNSQSSSCNGALESTARHDEESHSLSPPGENTVM 534
            :...|::.|:.|.::...|              |:....:..:||..     ..:|.|..::|.|
  Fly  5211 KFISQERSSTVIEKTKKQK--------------SKKEKKHNKIESVV-----EVALEPYVDSTFM 5256

Human   535 ADSFQIKVNLMTVEALEEGDYFEAIPLKASKFNS-----DLIDFAS-TSQAFNKVPSPHETKPDE 593
            .|..:.:.|      .|.....|::|::...::|     :::...| .|:...|...||.:|..:
  Fly  5257 RDDPKTQQN------AEIPSVLESLPIQPKSWSSIVSQTEVLPPTSIESKISQKAVDPHRSKEVQ 5315

Human   594 DAEAFENHAEKLGKRSIKSAHKKKDSPEPQVKMDKHEPHQDSGEEAEGCPSAPEETPVDKKPEVH 658
                     |.:.|..|.|.....||.:|:                       ::.|:::||:..
  Fly  5316 ---------EFISKEQIFSTTVNADSKKPE-----------------------DKKPLEEKPKKQ 5348

Human   659 EKAKRKSTR-------------------PHYEEEGEDD---DLQGVGEELS--SSPPSSCVSLET 699
            :..|.|.|:                   |..|....::   ::..|.||::  :.|..:.||   
  Fly  5349 KSKKEKKTKVVEAPEPIVESAVPEAVVEPTVEVTFVEEPVVEVTTVVEEVTPETQPEPTPVS--- 5410

Human   700 LGSHSEEGLDFKPSPPLSKVSVIPHDLFYFPHYEVPLAAVLEAYVEDPEDLKNEEMDLEEPEGYM 764
                     :..||.|||..|::....      ||........:.|:|||.|..|   |:|:...
  Fly  5411 ---------EVAPSQPLSWSSIVSQTT------EVTTNVTETRFTEEPEDKKPLE---EKPKKQK 5457

Human   765 PDLDSREEEADGSQSSSSSSVPGESLPSASDQVLYLSRGGVG-TTPASEPAPLAPHEDHQQRETK 828
            |..:.:.:..:..:....|:|| |::...:.:|.::....|. ||...|..|....|.....|..
  Fly  5458 PKKEKKTKVVEAPEPIVESAVP-EAVVEPTVEVTFVEEPVVEVTTVVEEVTPETQPEPTPVSEVA 5521

Human   829 ENDPM--DSHQSQESPNLENIA-----------NPLEENVTKESISSKKKEKRKHVDH----VES 876
            .:.|:  .|..||.:....|:.           .||||...|:  .|||::|.|.|:.    |||
  Fly  5522 PSQPLSWSSIVSQTTEITTNVTETRFTEEPEDKKPLEEKPKKQ--KSKKEKKTKVVEAPEPIVES 5584

Human   877 SL------------FVAPGSVQSSDDLEEDSSD-------------------YSIPSRTSHSDSS 910
            ::            ||....|:.:..:||.:.:                   .||.|:|:...::
  Fly  5585 AVPEAVVEPTVEVTFVEEPVVEVTTVVEEVTPETQPEPTPVSEVAPSQPLSWSSIVSQTTEVTTN 5649

Human   911 IYLRRHTHRSSE 922
            :...|.|....:
  Fly  5650 VTETRFTEEPED 5661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CLMNXP_011535460.1 CH 33..134 CDD:278723
CH 191..286 CDD:278723 18/150 (12%)
Msp300NP_001188695.1 SPEC 17..220 CDD:238103
SPEC 9546..9732 CDD:295325
sbcc 11187..12008 CDD:129705
SMC_prok_B 11614..12442 CDD:274008
SPEC 11994..12156 CDD:295325
SPEC 12374..12564 CDD:295325
Lipase_chap 12376..12529 CDD:281297
SPEC 12703..12923 CDD:238103
SPEC 12816..13032 CDD:295325
SPEC 13196..13374 CDD:238103
KASH 13484..13540 CDD:287506
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D46at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47535
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
33.010

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