DRSC/TRiP Functional Genomics Resources

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Protein Alignment TFEB and RTG3

DIOPT Version :9

Sequence 1:NP_001161299.2 Gene:TFEB / 7942 HGNCID:11753 Length:490 Species:Homo sapiens
Sequence 2:NP_009447.1 Gene:RTG3 / 852171 SGDID:S000000199 Length:486 Species:Saccharomyces cerevisiae


Alignment Length:357 Identity:91/357 - (25%)
Similarity:139/357 - (38%) Gaps:123/357 - (34%)


- Green bases have known domain annotations that are detailed below.


Human    62 PPTPAINTPVHFQSPPPVPGEVLKVQ-------SYLENPTSYHLQQSQHQKVREYLS------ET 113
            |...|:|||:..|       |.||.:       .:..:.|.|:|.......:...::      .|
Yeast   143 PVDRAMNTPLQQQ-------EGLKAELPHDFLFQHGTDDTMYNLTDDLSSSLSSSINSDMMTPNT 200

Human   114 YGNKFAAH---ISPAQ-GSPKPPPAASP--GVRAGHVLSSSAGNSAPNSPMAM-LHIGSNPEREL 171
            |.:.|:.:   :.||. .|...|...||  ..|||..||||..:.:.|:|... ..|.||     
Yeast   201 YSSSFSYNPQSLGPASVSSTYSPKVRSPSSSFRAGSFLSSSFRHGSINTPRTRHTSISSN----- 260

Human   172 DDVIDNIMRLDDVLGYINPEMQMPNTLPLSSSHLNVYSSDPQVTASLVGVTSSSCPADLTQKREL 236
              :.:||               .|.::|                ..|.|:||..           
Yeast   261 --MTENI---------------GPGSVP----------------KILGGLTSDE----------- 281

Human   237 TDAESRALAKERQKKDNHNLIERRRRFNINDRIKELGMLIPKA----NDL--DVRWNKGTILKAS 295
                     |.|:|::.||.:|||||..|..:|||||.|:|.:    :||  .::.|||.||..:
Yeast   282 ---------KLRRKREFHNAVERRRRELIKQKIKELGQLVPPSLLNYDDLGKQIKPNKGIILDRT 337

Human   296 VDYIRRMQKDLQKSRELENHSRRLEMTNKQLWLRIQEL-EMQARVHGL-PTT----SPSGMNMAE 354
            |:|::.:      :..||..:|:    .|.|..:|:|| |.::.|..| |.|    :.||.|.:|
Yeast   338 VEYLQYL------AEILEIQARK----KKALLAKIKELEEKKSSVAALSPFTNNHHASSGQNNSE 392

Human   355 ----------------LAQQVVKQELPSEEGP 370
                            :.:|..|.||.:.|.|
Yeast   393 NSEERIIDIRSVPNALMNEQNSKAELHNWEPP 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TFEBNP_001161299.2 MITF_TFEB_C_3_N 18..175 CDD:292573 33/132 (25%)
HLH 247..307 CDD:238036 26/65 (40%)
DUF3371 335..471 CDD:288684 14/57 (25%)
RTG3NP_009447.1 bHLHzip_USF_MITF 289..349 CDD:381393 24/65 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I3421
eggNOG 1 0.900 - - E1_KOG1318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000691
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45776
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1708
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.940

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